Structure of PDB 6y5j Chain E Binding Site BS01

Receptor Information

>6y5j Chain E (length=308) Species: 11309 (unidentified influenza virus)

HAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLI
DALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGT
LEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVT
MPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNI
GSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSI
MRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLA
TGMRNVPE

Ligand information

• Ligand ID: BMA
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-RWOPYEJCSA-N
• SMILES:
  CACTVS 3.341: OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-mannopyranose;
  beta-D-mannose;
  D-mannose;
  mannose
• ZINC: ZINC000003830679
• PDB chain: 6y5j Chain G Residue 3

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6y5j Structural transitions in influenza haemagglutinin at membrane fusion pH.
• Resolution: 5.6 Å
• Binding residue (original residue number in PDB): W222 G225
• Binding residue (residue number reindexed from 1): W205 G208
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0046789 host cell surface receptor binding

Biological Process

• GO:0019064 fusion of virus membrane with host plasma membrane

Cellular Component

• GO:0019031 viral envelope

External links

• PDB: RCSB:6y5j, PDBe:6y5j, PDBj:6y5j
• PDBsum: 6y5j
• PubMed: 32461688
• UniProt: P03437|HEMA_I68A0 Hemagglutinin (Gene Name=HA)