Structure of PDB 6ven Chain E Binding Site BS01

Receptor Information
>6ven Chain E (length=97) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS
AVKALQEASEAYLVALFEDTNLCAIHAKRVTIKPKDIQLARRIRGER
Ligand information
>6ven Chain I (length=146) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatccgat
Receptor-Ligand Complex Structure
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PDB6ven Structural basis for COMPASS recognition of an H2B-ubiquitinated nucleosome.
Resolution3.37 Å
Binding residue
(original residue number in PDB)		R42 T45 R72 R83 S86 R116 V117 T118
Binding residue
(residue number reindexed from 1)		R5 T8 R35 R46 S49 R79 V80 T81
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:6ven, PDBe:6ven, PDBj:6ven
PDBsum6ven
PubMed31922488
UniProtP84233|H32_XENLA Histone H3.2

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