Structure of PDB 6ogz Chain E Binding Site BS01

Receptor Information
>6ogz Chain E (length=794) Species: 28875 (Rotavirus A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QYEILQKTIPTFEPKESILKKLEDIKPEQVKKQTKLFRIFEPRQLPVYRA
NGEKELRNRWYWKLKRDTLPDGDYDVREYFLNLYDQVLTEMPDYLLLKDM
AVENKNSRDAGKVVDSETAAICDAIFQDEETEGVVRRFIAEMRQRVQADR
NVVNYPSILHPIDHAFNEYFLQHQLVEPLNNDIIFNYIPERIRNDVNYIL
NMDRNLPSTARYIRPNLLQDRLNLHDNFESLWDTITTSNYILARSVVPDL
KELVSTEAQIQKMSQDLQLEALTIQSETQFLTGINSQAANDCFKTLIAAM
LSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIINTII
YPAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFVNNNQFRQVVID
GVLNQVLNDNIRNGHVVNQLMEALMQLSRQQFPTMPVDYKRSIQRGILLL
SNRLGQLVDLTRLLAYNYETLMACITMNMQHVQTLTTEKLQLTSVTSLCM
LIGNATVIPSPQTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQK
KMKSIVEDFLKRLQIFDISRVPDDQMYRLRDRLRLLPVEIRRLDIFNLIL
MNMEQIERASDKIAQGVIIAYRDMQLERDEMYGYVNIARNLDGFQQINLE
ELMRTGDYAQITNMLLNNQPVALVGALPFITDSSVISLVAKLDATVFAQI
VKLRKVDTLKPILYKINSDSNDFYLVANYDWVPTSTTKVYKQIPQQFDFR
ASMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMRIMNEL
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ogz In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		V530 R534 R538
Binding residue
(residue number reindexed from 1)		V437 R441 R445
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0039616 T=2 icosahedral viral capsid
GO:0039625 viral inner capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:6ogz, PDBe:6ogz, PDBj:6ogz
PDBsum6ogz
PubMed31101900
UniProtG0YZK0

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