Structure of PDB 6cpo Chain E Binding Site BS01

Receptor Information
>6cpo Chain E (length=190) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GDTRPRFLWQPKRECHFFNGTERVRFLDRYFYNQEESVRFDSDVGEFRAV
TELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVGESFTVQRRVQPKVT
VYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQN
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6cpo CD4+T cell-mediated HLA class II cross-restriction in HIV controllers.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
R13 F26 P56 D57 Y60 W61 I67 Y78 H81 N82 V85
Binding residue
(residue number reindexed from 1)
R13 F26 P56 D57 Y60 W61 I67 Y78 H81 N82 V85
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6cpo, PDBe:6cpo, PDBj:6cpo
PDBsum6cpo
PubMed29884618
UniProtP01911|DRB1_HUMAN HLA class II histocompatibility antigen, DRB1 beta chain (Gene Name=HLA-DRB1)

[Back to BioLiP]