Structure of PDB 5yd3 Chain E Binding Site BS01

Receptor Information
>5yd3 Chain E (length=230) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVQLQQSGAELVRPGTSVKMSCKAAGYTFTKYWIGWVKQRPGHGLEWIGD
IHPGSFYSNYNEKFKGKATLTADTSSSTAYMQLSSLTSEDSAIYYCARDY
YTNYGDWGQGTSVTVSSDIVMTQAAPSVSVTPGESVSISCRSSKSLLHRN
GNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV
EAEDVGVYYCMQHLEYPYTFGSGTKLELKV
Ligand information
Receptor-Ligand Complex Structure
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PDB5yd3 Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody
Resolution1.35 Å
Binding residue
(original residue number in PDB)		W35 D52 H54 S57 Y59 H171 Y177 H236 E238 Y239 Y241
Binding residue
(residue number reindexed from 1)		W33 D50 H52 S55 Y57 H148 Y154 H213 E215 Y216 Y218
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003823 antigen binding
Biological Process
GO:0002250 adaptive immune response
GO:0006955 immune response
Cellular Component
GO:0005615 extracellular space
GO:0019814 immunoglobulin complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5yd3, PDBe:5yd3, PDBj:5yd3
PDBsum5yd3
PubMed29924367
UniProtP01630|KV2A6_MOUSE Ig kappa chain V-II region 7S34.1

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