Structure of PDB 5yc0 Chain E Binding Site BS01

Receptor Information
>5yc0 Chain E (length=42) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQAR
Ligand information
>5yc0 Chain H (length=28) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
EWEQKITALLEQAQIQQEKNEYELQKLD
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5yc0 Exceptional potency and structural basis of a T1249-derived lipopeptide fusion inhibitor against HIV-1, HIV-2, and simian immunodeficiency virus
Resolution2.0 Å
Binding residue
(original residue number in PDB)
R31 S35 V38 N42 L45 E49
Binding residue
(residue number reindexed from 1)
R5 S9 V12 N16 L19 E23
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5yc0, PDBe:5yc0, PDBj:5yc0
PDBsum5yc0
PubMed29425101
UniProtP04578|ENV_HV1H2 Envelope glycoprotein gp160 (Gene Name=env)

[Back to BioLiP]