Structure of PDB 5tc1 Chain E Binding Site BS01

Receptor Information
>5tc1 Chain E (length=129) Species: 329852 (Emesvirus zinderi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQ
SSAQNRKYTIKVEVPKVATQTVGGVELPVAAWRSYLNMELTIPIFATNSD
CELIVKAMQGLLKDGNPIPSAIAANSGIY
Ligand information
>5tc1 Chain R (length=242) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaauuccauuccccguucgcguuuacgcggacggcgcaaaccauugcgc
gcgacguaucgugcacuagguauaguguuacaaaguaaucuacuaauaga
augaggauuacccaugaagaaguucaacucuugacaaauccuuguccugc
cuguaaggagugaucaaucgaucagacgauauuauauguccgguuuuaaa
ccgauucccucaggaguguaacuagcugcuuggcuaguuacc
<<<<<...>>>>><<<<<<<<<....>>>>>>>>><<<<<....>>>>>.
<<<<....>>>>.<<<<......>>>><<<<...>>>><<<<....>>>>
<<<.<<....>>>>>.<<<.<<<...>>>>>>.<<<<....>>>>..<.<
<<...>>>>.<<<<<....>>>>><<<.<<<...>>>>>><<<<<...>>
>>><<<<<....>>>>><<.<<<.....<...>..>>.>>>.
Receptor-Ligand Complex Structure
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PDB5tc1 In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		F25 N27 S51
Binding residue
(residue number reindexed from 1)		F25 N27 S51
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
GO:0042802 identical protein binding
Biological Process
GO:0006417 regulation of translation
GO:1904972 negative regulation of viral translation
Cellular Component
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5tc1, PDBe:5tc1, PDBj:5tc1
PDBsum5tc1
PubMed27992877
UniProtP03612|CAPSD_BPMS2 Capsid protein

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