Structure of PDB 5t9c Chain E Binding Site BS01

Receptor Information

>5t9c Chain E (length=263) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168)

NLLSPDRILTVAHRGASGYVPEHTILSYETAQKMKADFIELDLQMTKDGK
LIVMHDEKLDRTTNGMGWVKDHTLADIKKLDAGSWFNEAYPEKAKPQYVG
LKVPTLEEVLDRFGKHANYYIETKSPDTYPGMEEKLIASLQKHKLLGKHS
KPGQVIIQSFSKESLVKVHQLQPNLPTVQLLEAKQMASMTDAALEEIKTY
AVGAGPDYKALNQENVRMIRSHGLLLHPYTVNNEADMHRLLDWGVTGVFT
NYPDLFHKVKKGY

Ligand information

• Ligand ID: CA
• InChI: InChI=1S/Ca/q+2
• InChIKey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Ca++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Ca+2]
• Formula: Ca
• Name: CALCIUM ION
• DrugBank: DB14577
• PDB chain: 5t9c Chain E Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5t9c Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component.
• Resolution: 1.48 Å
• Binding residue (original residue number in PDB): E70 D72 E152
• Binding residue (residue number reindexed from 1): E40 D42 E122
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): E70 D72 E152
• Catalytic site (residue number reindexed from 1): E40 D42 E122
• Enzyme Commision number: 3.1.4.46: glycerophosphodiester phosphodiesterase.

Gene Ontology

Molecular Function

• GO:0008081 phosphoric diester hydrolase activity
• GO:0008889 glycerophosphodiester phosphodiesterase activity
• GO:0016787 hydrolase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006071 glycerol metabolic process
• GO:0006629 lipid metabolic process
• GO:0071555 cell wall organization

Cellular Component

• GO:0005576 extracellular region

External links

• PDB: RCSB:5t9c, PDBe:5t9c, PDBj:5t9c
• PDBsum: 5t9c
• PubMed: 27780866
• UniProt: P37965|GLPQ_BACSU Glycerophosphodiester phosphodiesterase (Gene Name=glpQ)