Structure of PDB 5mki Chain E Binding Site BS01

Receptor Information
>5mki Chain E (length=70) Species: 406327 (Methanococcus vannielii SB) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DTQRPLDALGKSINTNVTVYLKDGKLVKGRLKAYDLHMNVALENAKIESD
EEKEFPMLVVRGDNVLYVSL
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5mki Chain E Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5mki Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Resolution2.048 Å
Binding residue
(original residue number in PDB)		H39 N41 R63
Binding residue
(residue number reindexed from 1)		H37 N39 R61
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0046872 metal ion binding
Cellular Component
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:5mki, PDBe:5mki, PDBj:5mki
PDBsum5mki
PubMed32422160
UniProtA6UPF5

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