Structure of PDB 4mh0 Chain E Binding Site BS01

Receptor Information
>4mh0 Chain E (length=627) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESH
AKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALV
NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQDVLVL
EKVQKYTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMP
NTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIRLVLQWAAMYGDLL
QEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVRQPIRGSDEVLF
KVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKVV
LKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMS
SKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNE
IQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSN
VAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIP
FMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNHQ
DVRSYVRQLNVIDNQRTLSQMSHRLEP
Ligand information
Ligand IDHR4
InChIInChI=1S/C17H17FN5O5PS2/c18-9-3-1-8(2-4-9)6-31-17-22-11-14(19)20-7-21-15(11)23(17)16-12(24)13-10(27-16)5-26-29(25,30)28-13/h1-4,7,10,12-13,16,24H,5-6H2,(H,25,30)(H2,19,20,21)/t10-,12-,13-,16-,29+/m1/s1
InChIKeyHQPHMVRGPVFPCD-BVGSDMBWSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1cc(ccc1CSc2nc3c(ncnc3n2C4C(C5C(O4)COP(=O)(O5)S)O)N)F
CACTVS 3.385Nc1ncnc2n([C@@H]3O[C@@H]4CO[P@@](S)(=O)O[C@H]4[C@H]3O)c(SCc5ccc(F)cc5)nc12
ACDLabs 12.01Fc1ccc(cc1)CSc3nc2c(ncnc2n3C5OC4COP(=O)(OC4C5O)S)N
CACTVS 3.385Nc1ncnc2n([CH]3O[CH]4CO[P](S)(=O)O[CH]4[CH]3O)c(SCc5ccc(F)cc5)nc12
OpenEye OEToolkits 1.7.6c1cc(ccc1CSc2nc3c(ncnc3n2[C@H]4[C@@H]([C@H]5[C@H](O4)CO[P@@](=O)(O5)S)O)N)F
FormulaC17 H17 F N5 O5 P S2
Name(2S,4aR,6R,7R,7aS)-6-{6-amino-8-[(4-fluorobenzyl)sulfanyl]-9H-purin-9-yl}-2-sulfanyltetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-7-ol 2-oxide
ChEMBL
DrugBank
ZINC
PDB chain4mh0 Chain E Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4mh0 Selective activation of Epac1 and Epac2
Resolution2.4 Å
Binding residue
(original residue number in PDB)
F367 V386 C395 L397 D401 F403 G404 A407 R414 A415 A416 L449 K450 K489
Binding residue
(residue number reindexed from 1)
F58 V77 C86 L88 D92 F94 G95 A98 R105 A106 A107 L140 K141 K165
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005085 guanyl-nucleotide exchange factor activity
Biological Process
GO:0007264 small GTPase-mediated signal transduction

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Molecular Function

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Biological Process
External links
PDB RCSB:4mh0, PDBe:4mh0, PDBj:4mh0
PDBsum4mh0
PubMed
UniProtQ9EQZ6|RPGF4_MOUSE Rap guanine nucleotide exchange factor 4 (Gene Name=Rapgef4)

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