Structure of PDB 3l9r Chain E Binding Site BS01

Receptor Information
>3l9r Chain E (length=275) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VFQGPTSFHLMQISTFVNSTWAQNQGSGWLDDLQIHGWESDSGTAIFLKP
WSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGC
ELHSGAIESSLRGALGGLDFVSIQNHSCVPAPDSGSRGQKFCALTTQYQG
ISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLL
LVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPNADWTWYLRVTLNVAA
GEAAGLNCRVKHSSLGDQDIILYWH
Ligand information
Ligand IDL9R
InChIInChI=1S/C44H86NO8P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-34-36-43(46)50-40-42(41-52-54(48,49)51-39-38-45(3,4)5)53-44(47)37-35-33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h21,23,42H,6-20,22,24-41H2,1-5H3/b23-21-/t42-/m0/s1
InChIKeyATHVAWFAEPLPPQ-FLHXZNPISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0CCCCCCCCCCCCCCCCCC(=O)OCC(COP(=O)([O-])OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCCCCCCCC
CACTVS 3.370CCCCCCCCCCCCCCCCCC(=O)OC[CH](CO[P]([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCCCCCCCC
ACDLabs 12.01O=C(OCC(OC(=O)CCCCCCC\C=C/CCCCCCCC)COP([O-])(=O)OCC[N+](C)(C)C)CCCCCCCCCCCCCCCCC
OpenEye OEToolkits 1.7.0CCCCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P@@](=O)([O-])OCC[N+](C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCCCC
CACTVS 3.370CCCCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P]([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/CCCCCCCC
FormulaC44 H86 N O8 P
Name(2S)-3-(octadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate;
1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine
ChEMBL
DrugBank
ZINC
PDB chain3l9r Chain E Residue 285 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3l9r Crystal structure of bovine CD1b3 with endogenously bound ligands.
Resolution2.3 Å
Binding residue
(original residue number in PDB)
L12 D68 A72 Y73 F74 F77 F123 F144
Binding residue
(residue number reindexed from 1)
L10 D66 A70 Y71 F72 F75 F120 F141
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links