Structure of PDB 3d8a Chain E Binding Site BS01
Receptor Information
>3d8a Chain E (length=63) Species:
83333
(Escherichia coli K-12) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
AFNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDI
REKVSSEMERFFP
Ligand information
>3d8a Chain X (length=7) Species:
83333
(Escherichia coli K-12) [
Search peptide sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
VEPGDDF
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3d8a
Structural basis of specific TraD-TraM recognition during F plasmid-mediated bacterial conjugation.
Resolution
2.55 Å
Binding residue
(original residue number in PDB)
S79 K83 G86 Y102 I109
Binding residue
(residue number reindexed from 1)
S20 K24 G27 Y43 I50
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003677
DNA binding
View graph for
Molecular Function
External links
PDB
RCSB:3d8a
,
PDBe:3d8a
,
PDBj:3d8a
PDBsum
3d8a
PubMed
18717787
UniProt
P10026
|TRAM1_ECOLI Relaxosome protein TraM (Gene Name=traM)
[
Back to BioLiP
]