Structure of PDB 1jds Chain E Binding Site BS01
Receptor Information
>1jds Chain E (length=226) Species:
2287
(Saccharolobus solfataricus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKY
NGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEY
IIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVG
NVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLV
VSDNLAKELEKSVMDGAKAVLDTLTS
Ligand information
Ligand ID
PO4
InChI
InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
InChIKey
NBIIXXVUZAFLBC-UHFFFAOYSA-K
SMILES
Software
SMILES
CACTVS 3.341
[O-][P]([O-])([O-])=O
ACDLabs 10.04
[O-]P([O-])([O-])=O
OpenEye OEToolkits 1.5.0
[O-]P(=O)([O-])[O-]
Formula
O4 P
Name
PHOSPHATE ION
ChEMBL
DrugBank
DB14523
ZINC
PDB chain
1jds Chain E Residue 5250 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1jds
Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus.
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
G21 R25 R86 G88 T89
Binding residue
(residue number reindexed from 1)
G19 R23 R84 G86 T87
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
H5 G21 R25 R43 E75 R86 T89 S204 D205 L207 L219
Catalytic site (residue number reindexed from 1)
H3 G19 R23 R41 E73 R84 T87 S202 D203 L205 L209
Enzyme Commision number
2.4.2.1
: purine-nucleoside phosphorylase.
2.4.2.28
: S-methyl-5'-thioadenosine phosphorylase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0016757
glycosyltransferase activity
GO:0016763
pentosyltransferase activity
GO:0017061
S-methyl-5-thioadenosine phosphorylase activity
Biological Process
GO:0009116
nucleoside metabolic process
GO:0009164
nucleoside catabolic process
Cellular Component
GO:0005829
cytosol
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:1jds
,
PDBe:1jds
,
PDBj:1jds
PDBsum
1jds
PubMed
11489901
UniProt
P50389
|PNPH_SACS2 Purine nucleoside phosphorylase (Gene Name=SSO2706)
[
Back to BioLiP
]