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Structure of PDB 6zqa Chain Db Binding Site BS01

Receptor Information
>6zqa Chain Db (length=81) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQ
TAVTCESCSTILCTPTGGKAKLSEGTSFRRK
Ligand information
>6zqa Chain D3 (length=787) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagauaguuaucugguugauccugccagucauaugcuugucucaagacaa
uaaauaacgauacagggcccauucgggucuuguaauuggaaugaguacaa
uguaaauaccuuaacgaggaacaauuggagggcaagucuggugccagcag
ccgcgguaauuccagcuccaauagcguauauugcucguaguugaacuauu
aauagggacggucgggggcaucaguauucaauugucagaggugaaauucu
uggauuuauugaagacuaacuacugcgaaagcauuugccaaggacguuuu
cauuaaucaagaacgaaaaacuaugccgacuagggaucgggugguguuuu
uuuaaugacccacucggcaccuuacgaggaguauggucgcaaggcugaaa
cuuaaaggaauugacggaagggcaccaccaggaguggagccugcgggaaa
cucaccagguccagacacaauauuugugggugguggugcaugugaugccc
uuguucuggcgcgcgcuacacugacggagccagcgagucuaaccuuggcc
gagaggucuugguaaaaacuccgucggggaacgaggaauuccuaguaagc
gcaagucaucagcuugcguugauuacgucccugcccuuuguacacaccgc
ccgucgcuaguaccgauugaauggcuuagugaggccucaggaucugcuua
gagaagggggcaacuccaucucagagcggaaauuuggacaaacuugguca
uuuagaggaacuaaguuuccguaggugaaccugcgga
...........................<<.<<<<<<...<..........
.>.....<<<<<<<.<<<<<....>>>>>.>>>.>>>>......<<..<.
..........>..>>.........<<<<<<.......<<<....>>>...
...............>>>>>>..>>>>>>>>.<.<<...<<<.<<...>>
....<<<<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>.
.....>.>>>>>>..>>.......<<....>>...>>>>..>>.>>>.>>
>...>>>...>>.>............<<...<<<..<<<<<<<<.<<<..
......>>>>>>>>>>>..>>>..>>..................<<....
.....>>.....<<<<<<<<<<<<..<<.<<<<<<..<<<.<<<<.....
....<<<<<.<....<<<<<...>>>>>......<<<.........>>>.
..>.>>>>>>>>>.>>>.....<<<<<<<............<<<..<<<<
....>>>>..>>>.....>>>>>>>............>>>>>>....<<<
<<<<<.......>>>>>>>>......>>...>>>>>>>............
>>>>>..<<<<.<<....<<<<<<<<.<<<..<.<<......<<<<<<<.
..<<.<<<......>>>.>>...>>>>>>>.....>>.>..>>>.>>>>>
>>>...>>.>>>>....<<<<<<<<....>>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zqa 90 S pre-ribosome transformation into the primordial 40 S subunit.
Resolution4.4 Å
Binding residue
(original residue number in PDB)		R17 H19 L21 P28 Q51 P66 G69 K70
Binding residue
(residue number reindexed from 1)		R16 H18 L20 P27 Q50 P65 G68 K69
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0044391 ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6zqa, PDBe:6zqa, PDBj:6zqa
PDBsum6zqa
PubMed32943521
UniProtP35997|RS27A_YEAST Small ribosomal subunit protein eS27A (Gene Name=RPS27A)

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