Structure of PDB 4v4g Chain DV Binding Site BS01

Receptor Information
>4v4g Chain DV (length=113) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGV
NVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDG
KKVRVAVASGKTI
Ligand information
>4v4g Chain DB (length=2825) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggucaagauaguaaggguccacgguggaugcccuggcgcuggagccgaug
aaggacgcgauuaccugcgaaaagccccgacgagcuggagauacgcuuug
acucggggauguccgaauggggaaacccaccucguaagagguauccgcaa
ggaugggaacucagggaacugaaacaucucaguaccugaaggagaagaaa
gagaauucgauuccguuaguagcggcgagcgaacccggaucagcccaaau
ucaaccccucaagccgaaguggcuggaaagcuacaccucagaaggugaga
guccuguaggcgaacgagcgguugacuguaaggucguuguucgugaaacg
augacugaauccgcgcggaccaccgcgcaaggcuaaauacucccagugac
cgauagcgcauaguaccgugagggaaaggugaaaagaaccccgggagggg
agugaaagagaaccugaaaccguggacuuacaagcagucauggcaccuua
ugcguguuauggcgugccuauugaagcaugagccggcgacuuagaccuga
cgugcgagcuuaaguugaaaaacggaggcggagcgaaagcgaguccgaau
agggcggcauuaguacgucgggcuagacucgaaaccaggugagcuaagca
ugaccagguugaaacccccgugacagggggcggaggaccgaaccggugcc
ugcugaaacagucucggaugaguuguguuuaggagugaaaagcuaaccga
accuggagauagcuaguucuccccgaaauguauugagguacagccucgga
uguugaccauguccuguagagcacucacaaggcuaagggcacguaaugug
uucuaaaccuuaugaaacuccgaaggggcacgcguuuaguccgggaguga
ggcugcgagagcuaacuuccguagccgagagggaaacaacccagaccauc
agcuaaggucccuaaaugaucgcucagugguuaaggaugugucgucgcau
agacagccaggagguuggcuuagaagcagccacccuucaaagagugcgua
auagcucacuggucgagugacgaugcgccgaaaaugaucggggcucaagu
gaucuaccgaagcuauggauucaacucgcgaagcgaguugucugguaggg
gagcguucaguccgcggagaagccauaccggaaggagugguggagccgac
ugaagugcggaugccggcaugaguaacgauaaaagaagugagaaucuucu
ucgccguaaggacaaggguuccuggggaagggucguccgcccagggaaag
ucgggaccuaaggugaggccgaacggcgcagccgauggacagcaggucaa
gauuccugcaccgaucauguggagugauggagggacgcauuacgcuaucc
aaugccaagcuauggcuaugcugguugguacgcucaagggcgaucggguc
agaaaaucuaccggucacaugccucagacguaucgggagcuuccucggaa
gcgaaguuggaaacgcgacggugccaagaaaagcuucuaaacguugaaac
augauugcccguaccgcaaaccgacacagguguccgagugucaaugcacu
aaggcgcgcgagagaacccucguuaaggaacuuugcaaucucaccccgua
acuucggaagaagggguccccacgcuucgcguggggcgcagugaauaggc
ccaggcgacuguuuaccaaaaucacagcacucugccaacacgaacagugg
acguauagggugugacgccugcccggugccggaaggucaaguggagcggu
aagugcaagcaaagcugcgaaaugaagccccggugaacggcggccguaac
uauaacgguccuaagguagcgaaauuccuugucggguaaguuccgaccug
cacgaaaggcguaacgaucugggcgcugucucaacgagggacucggugaa
auugaauuggcuguaaagaugcggccuacccguagcaggacgaaaagacc
ccguggagcuuuacuauagucuggcauucaacguugagacguggugcgua
ggauaggugggaggcgaagaacccuggcuacggcuggggggagccgccgg
ugaaauaccacccucuacuuuuugacguuguaaccugaaaaaucacuuuc
ggggaccgugcuuggcggguaguuugacuggggcggucgccucccaaaau
guaacggaggcgcccaaaggucaccucaagacgguuggaaaucgucugua
gagcgcaaagguagaagguggcuugacugcgagacugacacgucgagcag
ggaggaaacucgggcuuagugaaccggugguaccguguggaagggccauc
gaucaacggauaaaaguuaccccggggauaacaggcugaucucccccgag
aguccauaucggcggggagguuuggcaccucgaugucggcucgucgcauc
cuggggcugaagaaggucccaaggguugggcuguucgcccauuaaagcgg
cacgcgagcuggguucagaacgucgugagacaguucggucucuauccgcu
acgggcgcaggagaauugaggggaguugcuccuaguacgagaggaccgga
gugaacggaccgcuggucucccugcugucguaccaacggcacaugcaggg
uagcuauguccggaacggauaaccgcugaaagcaucuaagcgggaagcca
gccccaagaugaguucucccacuguucagguaagacucccggaagaccac
cggguuaagaggccaggcgugcacgcauagcaauguguucagcggacugg
ugcucaucagucgaggucuugacca
<<<<<<<<.......<<<<<<.<<......<<..<<<<<<<<..<<....
..<<<.<<........>>......<<<<<<....................
..>>>>>>...>>>.....<......>.<<<........>>><<<<....
>>>>>>...<<<<.......<......>........>>>.>.........
<<....>>...<<<.......<<.....>>......>>>...<<......
<<<<<...<...<<<....<<<<......>>>>.((......<<<.....
))>>>...>>>.....>...>>>>>......<<<<<<<<.........>>
>>>>>>......<<<<<..((((>>>>>...>>.........>>>>>>.>
>..............<<....>>....>>..........<<......>>.
...................>>.>>>>>>........<<<<<...<.....
....>...>>>>>...<............>.<<<<<<....<<<.<<.<<
<<<....<<<................>>>...<<....>>...<......
..>...........>>>>>.>>>>>..<<.<...<<<<<<.....<<<<<
<<<<..<<<.....<<<<<......>>>>>......>>>...<<<<.<.<
<........>>.>>>>>....>>>>>>>>>...<<<.....>>>......
>>>>>>......>.>>..<<<<<<....<<<<<....>>>>>..<<<<<.
....<.<<.<<<<<<...<<....<<<..<<<....<<............
.>>....>>>..>>>...>.>...>>>>>>.>.>.>....>>>>>.....
<<<<<<<.<........>.>>>>>>>....<<<......>>>....<<<.
<<<...<<<((......<<<<<............<<...<.<<<<<<...
.....<<<<<.<<...<<<.........>>>...>>.........<<...
...>>...>>>>>....>>>>>>.>..>>...........)).......>
>>>>.>>>...>>>>>>...<.<<.<<.......>>.>>>.......>>>
>>><.<<<<<<..<<.......<<<..<<....>>..>>>....>>.>.>
>>>>..>.....>>>>>>.......<<.....<<<<<.........>>>>
><<<<....<<<<<.<.<.<<<<<<<...<<.....>>.>>>>>>>...<
<.((...<...<<<...<<<....>>>...>>>...>.....<<<.....
.....>>>.>>.<..<<<<....<<...........<<<<.......<<<
<..<<<..<....[[.....>.>>>..<.<.......<<...<<<<<...
..........>>>>>......>>.......>.>.....<..<.....>..
.>.....>>>>.........>>>>................>>.......>
>>>..>.))....>>.....<<......>>>>>>>.<<<<<....>>>>>
..>>>>...<<<....<<<<<<<..<<...............<<<<<...
............>>>>><<<<...........>>>>............<<
<<<<<<<..<<...........>>..<<<<<<<.....<<.......>>.
......>>>>>>>.<<<<<..<...<<<<<<<..<<<........<<<..
...............>>>........>>>>>>>>..>>.>.<<<<<<...
....>>>>>>........<...........<<<<<.......>>>>>...
..>....>>>>>..>>.>>>>>>>.....>>..>>>>>>>.>>>.>>...
........<<<<<........>>>>>..<<<<<<<<.<<..<<......<
<<<.<<<<<<..<<<<..<<<.<<<<..<<<<...<<<<.<.<.......
........<<..<<<......<<<<<<......>>>>>>...>>>.....
.......>>......>.>.>>>>...>>>>...<<<..............
>>>.....>>>>.>>>...>>>>..<<<.......>>><<<<<<......
.....>>>>>>..<<...<<<<<<<...<<<.<<.......>>.>>>...
..<....(((.>....>>>>>>>...<<<<..<<<......>>>..>>>>
.<<<....>>>.>>))).......<<<<<<<.<<..))))..>>>>>>>>
>.............>>>>..>>>>>>..........<..<<<<<<....<
<.......>>....>>>>>>...>...........<<<<<...<<<<..<
<<<<<<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>>>>
.......>>>.>>....<<<<<<<....>>>.>>>>....>>...>>>>>
>>>>>....<<<<<<<...<<<<...<<<<<<...............>>>
>>>..<<<<....<<<<...<<<<<<<<<<..]]..>>>>>...>>>>>.
..>>>>..>>>>..........<<<...............>>>.......
.>>>>.......>>>>>>>................<.<<<<<.......>
>>>>....<<<<<<.<..<......<<<......>>>.....>...>.>>
>.>>>....>......>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v4g Structural basis for the control of translation initiation during stress.
Resolution11.5 Å
Binding residue
(original residue number in PDB)
R3 P4 H9 H10 N11 K13 K18 S26 G27 L38 P41 L76 H77 S79 T88 R93
Binding residue
(residue number reindexed from 1)
R2 P3 H8 H9 N10 K12 K17 S25 G26 L37 P40 L75 H76 S78 T87 R92
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 16 15:31:30 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v4g', asym_id = 'DV', bs = 'BS01', title = 'Structural basis for the control of translation initiation during stress.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v4g', asym_id='DV', bs='BS01', title='Structural basis for the control of translation initiation during stress.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412', uniprot = '', pdbid = '4v4g', asym_id = 'DV'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412', uniprot='', pdbid='4v4g', asym_id='DV')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>