Structure of PDB 8toc Chain DS Binding Site BS01

Receptor Information
>8toc Chain DS (length=129) Species: 154784 (Acinetobacter phage AP205) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ANKPMQPITSTANKIVWSDPTRLSTTFSASLLRQRVKVGIAELNNVSGQY
VSVYKRPAPKPEGCADACVIMPNENQSIRTVISGSAENLATLKAEWETHK
RNVDTLFASGNAGLGFLDPTAAIVSSDTT
Ligand information
>8toc Chain R (length=4269) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggagugaaccccggaggggguucgcugaaagccgaaucgaauucgacuuu
gcgugauucacaucacgucuuacucacgauacuaguaccgcgaguuaucu
ugugguaauuaaaaacuaccaggagauaacuuuaugaagaaaaggacaaa
agccuugcuucccuaugcgguuuucaucauacucagcuuucaacuaacau
uguugacugccuuguuuauguauuaccauuauaccuuuuaggagauggug
ucaugaacauguacaaauggguaccugaaaguauccgcgauucuggcgag
gggcaacccucuuauucaaauaauggugauuaugcaccgagcggcccuug
gguugcugcggguauucauaccaugccacaaucgcugcgggauuccauga
gaaauucuaucauggucaccgcgcaagcucgucgugaugucauuggcccc
gaauggggcccugacggacgcuuuacuggauaugcuucagugaucgggac
accugauccuaagccugcugauauugugaacaaguuuacaguugaacgca
gaccggucagcaacggaaauuuucaacagcgugugaaagcuggugacauu
guuguugcaccguauaccagugauggaaagauuacuguuaaacuagucgc
cggucagaaggacauuucaaguacuccugauuacgauuaucgaauugaca
guaguuuggcgucauccgccggauuuguuguugcuggugaacguugguau
uauaccaaacgucacuucauuaucccucguuacuuccaaaacuggcgcau
gcgccggcguaaguacguaacugguuggguaaugccaacguuuuauaguc
cgaaagagauuuuuaaucgccuuaaggauucguugguaccagauacuggg
uuagucacccaaguuugggcagacaacaacacaaaacggauggauuuccu
caccgcuauggcugaaaucccacagacucucucuucuuuucucgaugcgu
uggguuaccucggaucgcuuauuaaagauuuuaaacgucgucgcuucuuu
uuaaauaaagcgcaucaacguauccguaauaagcucggggugucuuucgc
agaaagaagaucacaaauuguaucuaaguacgaucguaagaucgcaucug
cccguaagccugcaauuauuguaaaauugcggcaacggaaagaaaaggcc
uuaaaagcccuagauaaaaugcguguucgagaggaaaagaaaaugauacg
ugaauuugccacucaggcagccucacuauggcuuucuuuucgguacgaga
ucaugccgcuuuauuaucaaucucaggacguauuggacguaauugccaac
ucgacuucugaauuuaugacaucgcgggacuuuguugcuaaagcaaucaa
cauuggaauuccuuuggaauggaaucuugaucaagaaaacuugguuucuc
aaccgagacacaaugugaugguuaaaucaaaauugucacccgaaaacaac
aucgggaagacucuuucaguuaauccauuuacaacagcuugggagcuguu
gacauuguccuucgucgucgacugguuugucaacuuuggugacgucaucg
caggguuuacuggcgguuacucagaugauucuggggcaacugcuaguugg
cgcuuugaugauaaaaagguauuccacuuaaagaauauccccucagcuau
ggugaucgucgacauuaacuucuacacccgucaggucauugacccgcggc
ugugcggggggcuugcuuucucccccaaacuuaaccuuuuccgguaucuu
gacgccaugaguuuaucauggaaucgaucucguuuaaagaucagucgagc
uacuugacaauuuucugcgcacccaucccggguggcgcccaaagugagga
aaaucacauggcaaauaagccaaugcaaccgaucacaucuacagcaaaua
aaauuguguggagugauccaacucguuuaucaacuacauuuucagcaagu
cuguuacgccaacguguuaaaguugguauagccgaacugaauaauguuuc
aggucaauauguaucuguuuauaagcguccugcaccuaaaccggaagguu
gugcagaugccugugucauuaugccgaaugaaaaccaauccauucgcaca
gugauuucagggucagccgaaaacuuggcuaccuuaaaagcagaauggga
aacucacaaacguaacguugacacacucuucgcgagcggcaacgccgguu
uggguuuccuugacccuacugcggcuaucguaucgucugauacuacugcu
uaaguggugauuacugugccuaaaagucaaaauaaacgacaaauaagacg
caguucuuccguuaauuacaagaauaucguuaaagcuugcaaugaugcaa
ugcuaaacgcuugugaucaacugaaguccacgaguauuccugcuuuccaa
ucaaacguccuuucggauguucuuucccucucugaugcggccgacauaac
agucaagcaccgaauuguuucuaaauucggcgagccugcugggucgagcc
uccgcgacguugcuuuuaacaauuauaaauuguucgaacaacaucuuggg
agcauuccucagauuacuaaucuguggcaggaaggaaaagaguuuuucuu
uuugcggaaagcaaaggcuaacuuggguaaaugguuaaaaacauuuaaac
uugacuauaauucuauuacagucgaguucaccccaggugagucuuauacc
ucggccacugggcacguaucgguguuugcuaagcuuuccaacuuagcuca
cuggacaugcacugcugacgucguugaugauguuugccaucuaguguauu
auaaucgcggccuaaaggcugccgcuagaaaacacaucggucugaugguc
ccaauugagggagagucuggguuugacaccuuuucucgccaccucauggg
uguuauauccaucguuccuggggcccgcggcgcauccgugccgaagaacc
aggaaacggaccguuuuaucgacguugaacccacuuucaauaugauucuc
cagcguuggguagcgggcgaaauuacucgcugcuuaacuuuagcuaagaa
ucaucuuggcgcaucacggaauauuaacgguaaaguuguauuucacgaug
cucaagaauugcacaaagaaaugauccgagaucuuucuuaugcuacuauu
gauuuuucaaacgcuucugauagcgucuugcugugggugguacagcuucu
uuuuccgaagcauguaucguauguuuugacacaguaucguucgucgacug
uccaacucgguucagaucuuaucgaaccgaauaaacuuucaaguauggga
aaugguuuuacuuuugaaguaaugacccuccucuuacugucgauagguag
aaucuuugauccuaccugccggguuuacggagaugauguuaucaucaaag
cagaaguagccgacgauuucaucaacacugugucauccauugccuucaug
acgaacaauaagaagaccuuuuugaagggucucuuucgugaaucaugcgg
ugcuuuccaauuugacacauuugacauccagucauuugaguucgaauggg
cugauaauuuuacugacguuauugcgaucugcaacaaacugaaguuaauu
aucgacgcugcucaaugcaacgaagcaguaauagcaauauuacgcaaugc
gcauaccgucaucugugaaugcaucccuguucuuugcaagggaccgcagc
cgccugauuucaaccucuuuuuaucucaauauguuuaugaugauaauugg
aagaagaaacagaugaaaucugauuuagccauaacuaagcuaaauagacu
cguugauaaacaaugggguuucuuuucagcuacacaucaucacccugagg
aauuauguuacguaaacauuccuguuuacgucccucgucgugauucuguu
caugcuggccagaaucuuuucguugaccuuucaaaucuuuacgcuuuacg
uuuuaccaaaucaacgguaagagguaaagguaaaugggucaauguucccc
acuggguuacaccgguugguucaauuuaucgugcuucccguaucagacag
caauacccuaacauaggggaauugccuaccugcuacuggucaccacauca
guuggacuugaucaccuccuaauaaaucuuuacgauuuauaauaauggua
uguacuaugaguauguauguagguugaaaacccuacccgcuuaggauugc
uuagcaguccuucccggca
..<<<<<<<<<<.(((>>>>>>>>>>.<<<<.<<<<<...>>>>>.>>>>
<<<<<<<....>>>>>>>....)))..<<<<<<...<<<<<.<<<<<<<<
<.<<<<<.........>>>>>.>>>>>>>>>....<<<<..<<<<.....
..>>>>.>>>>.....>>>>>.<<<<...<<<<<.<<..<<<<<......
.>>>>>..>>..<<<<<<<<...<<<<<<<...<<<...>>>.>>>>>>>
.>>>>>>>>.........>>>>>..>>>>>>>>>>.<<<<<<.<<<<<<<
<<....>>>>>.<<<....>>><<<<<<...<<<..<<<<<<<<<<<..>
>>>>>>>.>>>.>>>...>>>>>>>>>>.>>>>>>.<<<<....<<<<<<
.........>>>>>>...>>>>...............<<<<<..<<<<..
......>>>>.>>>>><<<<<.<<<<<<<.<<<<<<<.<<.<<<<<<<..
.>>>>>>>>>>>>.<<<<...<<.<<<<<<....>>>>>>.>.>...>>>
>..<<<<<<<<<<<<.......<<<.<<<<........>>>>.>>>...>
>>>>>>>.>>>>>>>>>>>>>>>......<<<<<<<<<<<<..<<<<<<.
.<<<<<<.<<.<<.......>>.>>.>>>>>>.>>>>>>.....>>>>>>
>>>>>>..>>>>>.<<<<<<<....<<<<<<<<<<<<<<.<<<<<<<<<.
..>>>>.>>>>>>>>..<<<<<<<<<<.<<<<<.......<<<<<<<<..
>>>>>>>..>......>>>>>.>>..>>>>>>>><<<<<<......<<<<
<..<<<.<<<<...>>>>..>>>..>>>>>>>>>>>..<<<<<<..<<<<
<.....>>>>>.>>>>>>.>>>.>>>>>>>>.....>>>.>>>>.....<
<<<<<...>>>.>>>................<<<<<<<<<.....<<<<.
..<...<<<<<<<...<<<<<<<<..<<<.....<<<<..<<<<<<..<<
...>>..>>>>>.>...>>>>>>>..>>>>>>>>>>>>>>>...>..>>>
>>>>>>>>>>..........<<<<<<..<.<<<<<....>>>>>.><<<.
.<<<<..<<<.<<<<<<.......>>>>>>>>>.>>>>..>>>...<<<.
......>>>.>>>>>>.....<<<<<<<<....<<<<<<<<<.<.<<<.<
<<<..<<<<<.....>>>>>..>>>>>>>.>.>>>>>>>>>....>>>>.
.>>>><<<<.....<<<.<<<.<<<<<<<<..<<<<..<....>.>>>>.
.>>..>>>>>>>>>.>>>.....>>>>....<<<<<<<....>>>>.>>>
...<<<<......<<<<...<<<.<<..<<<<<<<....>>>>>>><<<<
....>>>>.<<<<<.<<<<......>>>>..>>>>>..<<<<<.......
.>>>>>..>>.>>>.>>>>....>>>>....<<<<<<<<....>>>>>>>
>...<........>..<<<<<<.<<<<..<<<<.<.<<......<<<<<<
.<<.<<<.<<<<<<<<<<.<<<<<<....>>>>>>..>>>>>>>>>>.>>
>.>>.>>>>>>......<<<<<<<........>>>>>>>....>>>.>.>
>>.>>>>>>>>>>.........<<<<.<<<<..<<<<...>>>>.>>>>.
>>>>.<<<<.<..........>>>>>..........<<<<<<<<<<.<<<
<<<.<<<<<<.....>>>>>>....<<<<<.......>>>>>.>>>>>>.
>>>>.....<<<<<..<<<<<<<<.....>>>>.>>>>..>>>>>..>>>
>>>...<<<<<<......>>>.>>>.....<<<<<<.<<<<<<.<<<...
...>>>>>>>>>>>>>>>..........<<<<...<<<<<<<<<<....<
<.<.<<.<<<<<<........>>>>>>.>>.>.>>.>>>>>.>>>>>...
.<<<<<<......<<<<<<..<<<..<<<.<<<<<...<<<<....>>>>
>>>>>>>>.<<<<.<<<<<<.<<<.<<<<<..........>>>>>>>>.>
>>>>>..>>>><<.....<......>....>>.>>>..>>>>>>...<<<
<<<<<<....<<...<<<<<.....<<<.....>>>...>>>>>.>>...
>>>>>>>>>>>>>>><<<<<..<<<..<.<<<<<....>>>>>.>..>>>
..>>>>>>>>>.<<<<<<.<<....<<<.........>>>.....>>.>>
>>>>.<<<<.<<<.<<<<<<<<.....<<<<..<<<<<<<<....>>>>>
.>>>>.>>>>>>>>>>>.>>>.>>>>...............<<<<<<<..
.<<<<<<<<<....>>>>><<<.<<....<<.<<...<<<<<<<<....<
<<.<<.<<.<<<<<<.........>>>>>>...>>.>>>>>.>>>>.>>>
...>....<.<..<<<.<<<<<<<...>>>>>>>.>>>..>>....>>..
>>......<<<<<<<...>>>>>>.>..>>>>><<<<<<...>>>>>>..
>>>>.>>>>>>>.<<<<<<.<<<<<<<<<<<<<........>>>>>><<<
<<<<<<.<<<.....>>>.>>>>>>>>>...>>>>>>>.>>>>>>.....
.........<<<<<.<<.<<<<<<...<<<<<<........>>>>>>.>>
>>>>>>.>>>.>><<.<<<<<<......>>>>>>.>>..<<<<<<<....
......<<<<<<....>>>>>>>>>>>>>........<<<<<<<<<<<.<
<<<..<<<<<..<<<...<<<<.....>>>>...>>>....>>>>>>>>>
........>>>>>.<<<<<<<......<<<<<<....>>>>>>.....>>
>>>>>..>>>>>>..<<<<<.<<.....<<<<<<..<<<<<<.<<<<<<.
.<<<<<<<<<<<<<<<<........>>>>>>>>>>>>>....>>>.>>>>
>>.<<<<<<.<<<<<..<<<<<<<.<<<......>>>>>>>>>>..>>>>
>>>>>>>...<<<..<<<<<<.<<<<...>>>>>>>>>>.>>>...>>>>
>>.....<<<<<<<<......>>>>>.>>>..>>>>>><<<<<<<<<<<.
......>>>>>.>>>>>><<<<<<..<<<<<<<<<<<<<<.<<<<<<<..
......<<<<<<<.<<<...>>>>>>>>>>.............<<.<<<.
...<<<<.<<<<.....>>>>..>>>>..>>>..>>..>>>>>.<<<<<<
.<<<...>>>.>>>>>><<....<<<.<...<<<<<<...>>>>>>...>
.>>>....>>>>>>>>>.........>>>>>>>>>..<<<<<....<<<.
....<<...<<<<.<<<<<<<...>>>>>>>>>>>..>>.....>>>...
.<<<..<<<.<<<<<<.<<..<<<<.....>>>>..>>.>.>>>>>>>>.
.<<<<<<<<..<<<...<<<.<<<<<...>>>>>..>>>...>>>.>>>>
>>>>..<...<.....>...>..>>>.<<<<<<....>>>>>>.>>>>>.
>>>>>>..<<<<<<<<<..<<<.<<<<<..........>>>>>..>>>..
>>.<<..<............<<<<<<<<.<<....>>>>>.>>>>>....
>...>>...>>>>>>>..<<<.<<<<<<<.........>>>>>>>>>>..
.>>.>>>>>....<<<<<.<<<<..<<<<<...<<<..<<<<<..<<<<<
...((((((<<<<<<<<<....>>>>>>>>>.>>>>>..>>>>>..>>>.
...>>>>>..>>>>......<<<<<<<<<........<<<<<.<<<<<<.
<<<<<<<........>>>>>>>.>>>>>>>>>>>.>>>>>>>>>..>>>>
>............<<<<<<<<<<<<<.<<.<<<...<<.<<<.<<<...<
<<<<.<<<.)))))).>>>.>>>>>....>>>.>>>.>>....>>>>>.>
>>>>>>>>.>>>>........<<<<<<<.....>>>>>>>.......<<<
<<<<<<...>>>>>>>>><<<<<........>>>>><<<...<<<<..<<
...>>..>>>>...>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8toc Structural basis of Acinetobacter type IV pili targeting by an RNA virus
Resolution3.11 Å
Binding residue
(original residue number in PDB)
Q34 K37 V38 N75 S77 R79 S83
Binding residue
(residue number reindexed from 1)
Q34 K37 V38 N75 S77 R79 S83
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8toc, PDBe:8toc, PDBj:8toc
PDBsum8toc
PubMed38553443
UniProtQ9AZ42

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