Structure of PDB 6hiv Chain DP Binding Site BS01

Receptor Information
>6hiv Chain DP (length=207) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASLRYRRPYWMMFLKGVDNWKIYTVIQQPDHQRTEMLYQAWLGGLDRPYT
RPKCMANQPLWLSKKRHMLRKERLDGPETPLEKYVLEWHKKFHSFQGTER
PTPDDLHTALDLVERPLDLSYALQLLGQCRNLNNIRFAKETFLVFLEACL
RVGRRDCAEYALEHAEPLGFWFIDEDHRRYLQGEQTWYKLSPLDNLYYPV
EENAKLN
Ligand information
>6hiv Chain CA (length=621) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
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aauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcua
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aauuaaauuaaucuauuagucagaaauggaugccagccguugcgguaauu
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....................<<<.......<<<<..............<.
..>..........................................<<...
.<<...<<<.......>>>..>>.......>>........<<....>>..
..................................................
.................<<<.(...<<<<<.....<<..).>>.......
>>>>>>>>.......>>>>............<..................
.<.......>.....................>............<<<...
.>>>................<......>..>>>..<<.............
.<<<<<............................................
..................................................
.....................>>>>>..................>>....
<<.<<<..<<<<<<.....>>>>>>...>>>..>>....<<<<<<<<<..
..>>>>>>>>>..........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6hiv Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Resolution7.8 Å
Binding residue
(original residue number in PDB)		A10 S11 L12 R13 Y14 R16 P17 Y18 W19 M21 F22 L23 K24 C63
Binding residue
(residue number reindexed from 1)		A1 S2 L3 R4 Y5 R7 P8 Y9 W10 M12 F13 L14 K15 C54
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005737 cytoplasm
GO:0005763 mitochondrial small ribosomal subunit

View graph for
Cellular Component
External links
PDB RCSB:6hiv, PDBe:6hiv, PDBj:6hiv
PDBsum6hiv
PubMed30213880
UniProtQ38F25

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