Structure of PDB 4v4q Chain DO Binding Site BS01

Receptor Information

>4v4q Chain DO (length=117) Species: 562 (Escherichia coli)

MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVA
ASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYH
GRVQALADAAREAGLQF

Ligand information

>4v4q Chain DA (length=117)

gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggc

<<<<<<<<<.....<<<<<<<<.....<<<<<<.............>>>>
..>>....>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>>>>>>>>

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v4q Structures of the bacterial ribosome at 3.5 A resolution.
• Resolution: 3.46 Å
• Binding residue (original residue number in PDB): M1 R10 R25 V27 H29 P32 H34 E46 V47 V49 V54 E55 N67 K68 F97 H100 G101
• Binding residue (residue number reindexed from 1): M1 R10 R25 V27 H29 P32 H34 E46 V47 V49 V54 E55 N67 K68 F97 H100 G101

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0008097 5S rRNA binding
• GO:0019843 rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v4q, PDBe:4v4q, PDBj:4v4q
• PDBsum: 4v4q
• PubMed: 16272117
• UniProt: P0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)