Structure of PDB 6hiv Chain DH Binding Site BS01

Receptor Information
>6hiv Chain DH (length=564) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLSQNVAKTTVPSYYMIRTNLPHRKPQNQWEGVYYYSGITKRQRHLILLH
RKREREAHMRSFNISRASVLQRLEQLSGDRKQESLPPHVRLDLAVRLAQH
GLYQQATPIVDELHHQKALHAGHYALLINALACPRLGQRILHCDAQCDPA
LTYKLLGDENGEERAQEAYRWFDLALTSLAVDCGHFVPYLPQGTAAASHI
TNALMRTLLTCGYTHVAAIPDSVYDRMGSMGISPTISTYELVMLALSLQG
NMVEAESILSFLRSHHSEHITVESFNALLLGHREARQFDCCDAIWQELVD
RRWPRASPLTAELYLRSIMDHANTPTSEPLQSFANINVVEKKKVPLVLAQ
MDELGVPRTHLSRVLMDEVEDSLRKFQTYRSRFYEWGRAVKQFDFIEFRR
RNGWLYDLHLMKCTTKQVGPLRDFNDPDAVQGAVATAEIPAFFNERPAWE
RPPLEETLYVTTNKERYDDVRGGDIYYDDTRGLHDRSPTWMNEVPETRYD
RLYGVNHPDIAKIGIRRHLNVEYVNRKEVVERDAALMKKTLSSGRRLRHR
VESSRTHRNAGSLS
Ligand information
>6hiv Chain CA (length=621) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
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uuagauggguguggaaaaauaaaaaaaauaauuaauauauaucaauaaua
aauuaaauuaaucuauuagucagaaauggaugccagccguugcgguaauu
ucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaaguguug
auuuaaccaauaaaaauauaaauaauuuuuauuuguuuuuaaacaccauu
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auuuauucauauaauuaauaggauaauauuuguaguuuuugauaccauga
uaaggauuauaaauugaaaguguuaauaucauaaucaaaauuuauuauuu
auauuaaauauguauguguagauaaaauaagaaauuaaaaagguauuguu
gcccaccaauuuuuauaauaaaaauaacgugcaguaauuaauauauuuau
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....................<<<.......<<<<..............<.
..>..........................................<<...
.<<...<<<.......>>>..>>.......>>........<<....>>..
..................................................
.................<<<.(...<<<<<.....<<..).>>.......
>>>>>>>>.......>>>>............<..................
.<.......>.....................>............<<<...
.>>>................<......>..>>>..<<.............
.<<<<<............................................
..................................................
.....................>>>>>..................>>....
<<.<<<..<<<<<<.....>>>>>>...>>>..>>....<<<<<<<<<..
..>>>>>>>>>..........
Receptor-Ligand Complex Structure
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PDB6hiv Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Resolution7.8 Å
Binding residue
(original residue number in PDB)		Y14 R18 Q43 Y385 S387 R388 V396 K397 D400
Binding residue
(residue number reindexed from 1)		Y14 R18 Q43 Y379 S381 R382 V390 K391 D394
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006396 RNA processing
GO:0007005 mitochondrion organization
Cellular Component
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6hiv, PDBe:6hiv, PDBj:6hiv
PDBsum6hiv
PubMed30213880
UniProtQ580V1

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