Structure of PDB 6yx8 Chain DDD Binding Site BS01

Receptor Information
>6yx8 Chain DDD (length=161) Species: 2283151 (Nostoc sp. WR13) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQDAITSVINSSDVQGKYLDNAALEKLKGYFATGELRVRAATTISANAAA
IVKEAVAKSLLYSDITRPGGNMYTTRRYAACIRDLDYYLRYATYAMLAGD
PSILDERVLNGLKETYNSLGVPVGATVQAIQAIKEVTASLVGPDAGKEMG
VYFDYICSGLS
Ligand information
Ligand IDPXQ
InChIInChI=1S/C33H42N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h13,19-20,34-35H,7-12,14-15H2,1-6H3,(H,36,43)(H,38,39)(H,40,41)/b26-13-/t19-,20-/m1/s1
InChIKeyRIXXCMVADHNPLY-UKJJQICTSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC[CH]1[CH](C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(C=C4NC(=O)C(=C4C)CC)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C
CACTVS 3.385CC[C@@H]1[C@@H](C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(\C=C4/NC(=O)C(=C4C)CC)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C
OpenEye OEToolkits 2.0.7CCC1C(C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C
OpenEye OEToolkits 2.0.7CC[C@@H]1[C@H](C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C
FormulaC33 H42 N4 O6
Name3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(~{Z})-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid
ChEMBL
DrugBank
ZINC
PDB chain6yx8 Chain DDD Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6yx8 The high resolution structure of allophycocyanin from cyanobacterium Nostoc sp. WR13
Resolution1.831 Å
Binding residue
(original residue number in PDB)
N71 R76 R77 A80 C81 R83 D84 Y87 V121
Binding residue
(residue number reindexed from 1)
N71 R76 R77 A80 C81 R83 D84 Y87 V121
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009579 thylakoid
GO:0016020 membrane
GO:0030089 phycobilisome
GO:0031676 plasma membrane-derived thylakoid membrane

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6yx8, PDBe:6yx8, PDBj:6yx8
PDBsum6yx8
PubMed
UniProtA0A4Y5PW23

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