Structure of PDB 4v4g Chain D4 Binding Site BS01

Receptor Information
>4v4g Chain D4 (length=46) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKRTYQPNNRKRAKTHGFRARMKTKSGRNILARRRAKGRHQLTVSD
Ligand information
>4v4g Chain DB (length=2825) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggucaagauaguaaggguccacgguggaugcccuggcgcuggagccgaug
aaggacgcgauuaccugcgaaaagccccgacgagcuggagauacgcuuug
acucggggauguccgaauggggaaacccaccucguaagagguauccgcaa
ggaugggaacucagggaacugaaacaucucaguaccugaaggagaagaaa
gagaauucgauuccguuaguagcggcgagcgaacccggaucagcccaaau
ucaaccccucaagccgaaguggcuggaaagcuacaccucagaaggugaga
guccuguaggcgaacgagcgguugacuguaaggucguuguucgugaaacg
augacugaauccgcgcggaccaccgcgcaaggcuaaauacucccagugac
cgauagcgcauaguaccgugagggaaaggugaaaagaaccccgggagggg
agugaaagagaaccugaaaccguggacuuacaagcagucauggcaccuua
ugcguguuauggcgugccuauugaagcaugagccggcgacuuagaccuga
cgugcgagcuuaaguugaaaaacggaggcggagcgaaagcgaguccgaau
agggcggcauuaguacgucgggcuagacucgaaaccaggugagcuaagca
ugaccagguugaaacccccgugacagggggcggaggaccgaaccggugcc
ugcugaaacagucucggaugaguuguguuuaggagugaaaagcuaaccga
accuggagauagcuaguucuccccgaaauguauugagguacagccucgga
uguugaccauguccuguagagcacucacaaggcuaagggcacguaaugug
uucuaaaccuuaugaaacuccgaaggggcacgcguuuaguccgggaguga
ggcugcgagagcuaacuuccguagccgagagggaaacaacccagaccauc
agcuaaggucccuaaaugaucgcucagugguuaaggaugugucgucgcau
agacagccaggagguuggcuuagaagcagccacccuucaaagagugcgua
auagcucacuggucgagugacgaugcgccgaaaaugaucggggcucaagu
gaucuaccgaagcuauggauucaacucgcgaagcgaguugucugguaggg
gagcguucaguccgcggagaagccauaccggaaggagugguggagccgac
ugaagugcggaugccggcaugaguaacgauaaaagaagugagaaucuucu
ucgccguaaggacaaggguuccuggggaagggucguccgcccagggaaag
ucgggaccuaaggugaggccgaacggcgcagccgauggacagcaggucaa
gauuccugcaccgaucauguggagugauggagggacgcauuacgcuaucc
aaugccaagcuauggcuaugcugguugguacgcucaagggcgaucggguc
agaaaaucuaccggucacaugccucagacguaucgggagcuuccucggaa
gcgaaguuggaaacgcgacggugccaagaaaagcuucuaaacguugaaac
augauugcccguaccgcaaaccgacacagguguccgagugucaaugcacu
aaggcgcgcgagagaacccucguuaaggaacuuugcaaucucaccccgua
acuucggaagaagggguccccacgcuucgcguggggcgcagugaauaggc
ccaggcgacuguuuaccaaaaucacagcacucugccaacacgaacagugg
acguauagggugugacgccugcccggugccggaaggucaaguggagcggu
aagugcaagcaaagcugcgaaaugaagccccggugaacggcggccguaac
uauaacgguccuaagguagcgaaauuccuugucggguaaguuccgaccug
cacgaaaggcguaacgaucugggcgcugucucaacgagggacucggugaa
auugaauuggcuguaaagaugcggccuacccguagcaggacgaaaagacc
ccguggagcuuuacuauagucuggcauucaacguugagacguggugcgua
ggauaggugggaggcgaagaacccuggcuacggcuggggggagccgccgg
ugaaauaccacccucuacuuuuugacguuguaaccugaaaaaucacuuuc
ggggaccgugcuuggcggguaguuugacuggggcggucgccucccaaaau
guaacggaggcgcccaaaggucaccucaagacgguuggaaaucgucugua
gagcgcaaagguagaagguggcuugacugcgagacugacacgucgagcag
ggaggaaacucgggcuuagugaaccggugguaccguguggaagggccauc
gaucaacggauaaaaguuaccccggggauaacaggcugaucucccccgag
aguccauaucggcggggagguuuggcaccucgaugucggcucgucgcauc
cuggggcugaagaaggucccaaggguugggcuguucgcccauuaaagcgg
cacgcgagcuggguucagaacgucgugagacaguucggucucuauccgcu
acgggcgcaggagaauugaggggaguugcuccuaguacgagaggaccgga
gugaacggaccgcuggucucccugcugucguaccaacggcacaugcaggg
uagcuauguccggaacggauaaccgcugaaagcaucuaagcgggaagcca
gccccaagaugaguucucccacuguucagguaagacucccggaagaccac
cggguuaagaggccaggcgugcacgcauagcaauguguucagcggacugg
ugcucaucagucgaggucuugacca
<<<<<<<<.......<<<<<<.<<......<<..<<<<<<<<..<<....
..<<<.<<........>>......<<<<<<....................
..>>>>>>...>>>.....<......>.<<<........>>><<<<....
>>>>>>...<<<<.......<......>........>>>.>.........
<<....>>...<<<.......<<.....>>......>>>...<<......
<<<<<...<...<<<....<<<<......>>>>.((......<<<.....
))>>>...>>>.....>...>>>>>......<<<<<<<<.........>>
>>>>>>......<<<<<..((((>>>>>...>>.........>>>>>>.>
>..............<<....>>....>>..........<<......>>.
...................>>.>>>>>>........<<<<<...<.....
....>...>>>>>...<............>.<<<<<<....<<<.<<.<<
<<<....<<<................>>>...<<....>>...<......
..>...........>>>>>.>>>>>..<<.<...<<<<<<.....<<<<<
<<<<..<<<.....<<<<<......>>>>>......>>>...<<<<.<.<
<........>>.>>>>>....>>>>>>>>>...<<<.....>>>......
>>>>>>......>.>>..<<<<<<....<<<<<....>>>>>..<<<<<.
....<.<<.<<<<<<...<<....<<<..<<<....<<............
.>>....>>>..>>>...>.>...>>>>>>.>.>.>....>>>>>.....
<<<<<<<.<........>.>>>>>>>....<<<......>>>....<<<.
<<<...<<<((......<<<<<............<<...<.<<<<<<...
.....<<<<<.<<...<<<.........>>>...>>.........<<...
...>>...>>>>>....>>>>>>.>..>>...........)).......>
>>>>.>>>...>>>>>>...<.<<.<<.......>>.>>>.......>>>
>>><.<<<<<<..<<.......<<<..<<....>>..>>>....>>.>.>
>>>>..>.....>>>>>>.......<<.....<<<<<.........>>>>
><<<<....<<<<<.<.<.<<<<<<<...<<.....>>.>>>>>>>...<
<.((...<...<<<...<<<....>>>...>>>...>.....<<<.....
.....>>>.>>.<..<<<<....<<...........<<<<.......<<<
<..<<<..<....[[.....>.>>>..<.<.......<<...<<<<<...
..........>>>>>......>>.......>.>.....<..<.....>..
.>.....>>>>.........>>>>................>>.......>
>>>..>.))....>>.....<<......>>>>>>>.<<<<<....>>>>>
..>>>>...<<<....<<<<<<<..<<...............<<<<<...
............>>>>><<<<...........>>>>............<<
<<<<<<<..<<...........>>..<<<<<<<.....<<.......>>.
......>>>>>>>.<<<<<..<...<<<<<<<..<<<........<<<..
...............>>>........>>>>>>>>..>>.>.<<<<<<...
....>>>>>>........<...........<<<<<.......>>>>>...
..>....>>>>>..>>.>>>>>>>.....>>..>>>>>>>.>>>.>>...
........<<<<<........>>>>>..<<<<<<<<.<<..<<......<
<<<.<<<<<<..<<<<..<<<.<<<<..<<<<...<<<<.<.<.......
........<<..<<<......<<<<<<......>>>>>>...>>>.....
.......>>......>.>.>>>>...>>>>...<<<..............
>>>.....>>>>.>>>...>>>>..<<<.......>>><<<<<<......
.....>>>>>>..<<...<<<<<<<...<<<.<<.......>>.>>>...
..<....(((.>....>>>>>>>...<<<<..<<<......>>>..>>>>
.<<<....>>>.>>))).......<<<<<<<.<<..))))..>>>>>>>>
>.............>>>>..>>>>>>..........<..<<<<<<....<
<.......>>....>>>>>>...>...........<<<<<...<<<<..<
<<<<<<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>>>>
.......>>>.>>....<<<<<<<....>>>.>>>>....>>...>>>>>
>>>>>....<<<<<<<...<<<<...<<<<<<...............>>>
>>>..<<<<....<<<<...<<<<<<<<<<..]]..>>>>>...>>>>>.
..>>>>..>>>>..........<<<...............>>>.......
.>>>>.......>>>>>>>................<.<<<<<.......>
>>>>....<<<<<<.<..<......<<<......>>>.....>...>.>>
>.>>>....>......>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v4g Structural basis for the control of translation initiation during stress.
Resolution11.5 Å
Binding residue
(original residue number in PDB)
M1 K2 R3 T4 Y5 Q6 P7 N8 R10 K11 R12 A13 K14 H16 F18 R19 K25 S26 R28 N29 A32 R33 R34 R35 A36 R39 H40 Q41 S45
Binding residue
(residue number reindexed from 1)
M1 K2 R3 T4 Y5 Q6 P7 N8 R10 K11 R12 A13 K14 H16 F18 R19 K25 S26 R28 N29 A32 R33 R34 R35 A36 R39 H40 Q41 S45
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 16 15:30:23 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v4g', asym_id = 'D4', bs = 'BS01', title = 'Structural basis for the control of translation initiation during stress.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v4g', asym_id='D4', bs='BS01', title='Structural basis for the control of translation initiation during stress.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v4g', asym_id = 'D4'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v4g', asym_id='D4')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>