Structure of PDB 9fdk Chain D Binding Site BS01
Receptor Information
>9fdk Chain D (length=416) Species:
224324
(Aquifex aeolicus VF5) [
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SYPAIPRIYAETTLNMLLKRAKKPRVHSIDEYLKDGGYQALEKALNMSPE
EIIDWVDKSTLRGGGGAGFPTGKKWKFAVQNPGPRYFICNADESEPGTFK
DRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEA
KKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLK
PPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLF
PVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGNKKVKAVFSGALDCFSS
EELDIPMDYSPLGFGGTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTP
CRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRL
IRQTLEKFPEEWEKYR
Ligand information
Ligand ID
SF4
InChI
InChI=1S/4Fe.4S
InChIKey
LJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 2.0.7
[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385
S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
Formula
Fe4 S4
Name
IRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain
9fdk Chain D Residue 501 [
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Receptor-Ligand Complex Structure
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PDB
9fdk
Structural robustness of the NADH binding site in NADH:ubiquinone oxidoreductase (complex I).
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
P199 T346 C347 G348 Q349 C350 C353 I392 C393 L395 G396
Binding residue
(residue number reindexed from 1)
P197 T344 C345 G346 Q347 C348 C351 I390 C391 L393 G394
Annotation score
1
Gene Ontology
Molecular Function
GO:0046872
metal ion binding
GO:0048038
quinone binding
GO:0051539
4 iron, 4 sulfur cluster binding
Biological Process
GO:1902600
proton transmembrane transport
View graph for
Molecular Function
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Biological Process
External links
PDB
RCSB:9fdk
,
PDBe:9fdk
,
PDBj:9fdk
PDBsum
9fdk
PubMed
38960077
UniProt
O66841
|NUOF_AQUAE NADH-quinone oxidoreductase subunit F (Gene Name=nuoF)
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