Structure of PDB 9f1m Chain D Binding Site BS01

Receptor Information
>9f1m Chain D (length=126) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKL
NLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKP
GDDIVLMAEALEKLFLQKINELPTEE
Ligand information
Ligand IDA1H80
InChIInChI=1S/C62H85N11O7S/c1-42-57(44(3)80-68-42)48-22-25-52-51(36-48)66-54(26-19-45-17-23-50(24-18-45)79-35-13-28-69(7)8)72(52)34-33-70-29-31-71(32-30-70)40-56(76)63-27-12-10-9-11-14-55(75)67-59(62(4,5)6)61(78)73-39-49(74)37-53(73)60(77)64-38-46-15-20-47(21-16-46)58-43(2)65-41-81-58/h15-18,20-25,36,41,49,53,59,74H,9-14,19,26-35,37-40H2,1-8H3,(H,63,76)(H,64,77)(H,67,75)
InChIKeyITTBTKCGUXDYKB-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1c(c(on1)C)c2ccc3c(c2)nc(n3CCN4CCN(CC4)CC(=O)NCCCCCCC(=O)NC(C(=O)N5CC(CC5C(=O)NCc6ccc(cc6)c7c(ncs7)C)O)C(C)(C)C)CCc8ccc(cc8)OCCCN(C)C
CACTVS 3.385CN(C)CCCOc1ccc(CCc2nc3cc(ccc3n2CCN4CCN(CC4)CC(=O)NCCCCCCC(=O)NC(C(=O)N5CC(O)CC5C(=O)NCc6ccc(cc6)c7scnc7C)C(C)(C)C)c8c(C)onc8C)cc1
FormulaC62 H85 N11 O7 S
Name1-[2-[7-[2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]ethanoylamino]heptanoylamino]-3,3-dimethyl-butanoyl]-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide;
Meropenem, bound form
ChEMBL
DrugBank
ZINC
PDB chain9f1m Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9f1m First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 45
Resolution1.90001 Å
Binding residue
(original residue number in PDB)
F79 W81 P82 V87 K91 L92 N140 D145 I146 M149
Binding residue
(residue number reindexed from 1)
F37 W39 P40 V45 K49 L50 N98 D103 I104 M107
Annotation score1
External links
PDB RCSB:9f1m, PDBe:9f1m, PDBj:9f1m
PDBsum9f1m
PubMed
UniProtO60885|BRD4_HUMAN Bromodomain-containing protein 4 (Gene Name=BRD4)

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