Structure of PDB 9cc9 Chain D Binding Site BS01
Receptor Information
>9cc9 Chain D (length=850) Species:
4100
(Nicotiana benthamiana) [
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FEVENLLQLLTDNVSAKGELENLLKEVQHLKGFLDDAAKLPSDSEQWKVL
VEEIQKTVHTAEDAVDKFVVQAKLHKEKNKMARILDVGHLATVRNLAAEV
KGIHDQVKELRLNNQALQARPTLELPQQGPALEDDEVVGFDEEANKVINR
LVKESKDLDIIPVVGMPGLGKTTLARKIYKDPKLSYEFFGVHWVYVGQSY
KIKDVFLNILKFFTRRTEDYQHEDVDALAKVIAGFINKGGRCLICLDDVW
ETKVIDYVKTIFPENEKGHRVMMTTRNKVLATYANSDPHDLKFLTPKESF
ELLVKRVFGKKPCPKDLVGHGESIAGKCGGVPLAVVVIAGALRGRPNTSD
WIRVERNVVQHLYTNSEESCLKFVEMSYDHLPQEVQTCFLYCGVFPRGFD
IPSWKVIRLWIAEGLIKPQESYTLEEIAEFYLNDLVNRNLVILQQKRSDG
QIKTCRLHVMLHQFCKKEASNKWLFQEVSLTPDQAIDPNKSRRLCIQPSN
LKDFLSKKPSAEHVRSFYCFSSKEKQIRGLTPNDIKLIHKAFPLVRVLDV
ESLKFLFSKDFNQLFHLRYIAISGDFNAIPLTFGKFWNLQTLILNTSTSE
STLDVKADIWNMLQLRHLHTNIPAKLQPPTATTSGKASCLQTLCMVAPES
CEKEVLAKACHLKKLSIRGQMAAFLGAYKGGINNLVELKCLEQLKLLNDV
LYMNKAPHLPQTFSQLVRTVKKLTLTNTRFAWSEADKLGQLESLEILKFK
ENAFAGDSWKPKMGFSALRVLWIERAEFETWEASEINFPVLRNLVLMSCD
KLETVPFELANLSDLYEMRLENTSKAVKSAKAILESKTDKNIKFNLTIFP
Ligand information
Ligand ID
ATP
InChI
InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
Formula
C10 H16 N5 O13 P3
Name
ADENOSINE-5'-TRIPHOSPHATE
ChEMBL
CHEMBL14249
DrugBank
DB00171
ZINC
ZINC000004261765
PDB chain
9cc9 Chain D Residue 901 [
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Receptor-Ligand Complex Structure
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PDB
9cc9
Activation of the helper NRC4 immune receptor forms a hexameric resistosome.
Resolution
3.54 Å
Binding residue
(original residue number in PDB)
L151 E155 V157 G187 G189 K190 T191 T192 D267 L321 R325 V355
Binding residue
(residue number reindexed from 1)
L132 E136 V138 G168 G170 K171 T172 T173 D248 L302 R306 V336
Annotation score
4
External links
PDB
RCSB:9cc9
,
PDBe:9cc9
,
PDBj:9cc9
PDBsum
9cc9
PubMed
39094568
UniProt
A0A5J6DCT7
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