Structure of PDB 9bf5 Chain D Binding Site BS01

Receptor Information

>9bf5 Chain D (length=1190) Species: 666 (Vibrio cholerae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MNVSIEEFTHFDFQLVPEPSPLDLVITEPLKNHIEVNGVKSGALLPLPFQ
TGIGKTYTALNFLLQQMLEQVRSELKEENTGKKSKRLLYYVTDSVDNVVS
AKADLLKLIEKQTVKGEPRFTLEQQEYLKAQIVHLPNQSEQLLQCSDAVL
NDVLIGFNLNAERDVQAEWSAISGLRRHASNPEVKISLNRQAGYFYRNLI
DRLQKKQKGADRVLLSGSLLASVETLLPGEKIRNGSAHVAFLTTSKFLKG
FHNTRSRYSPLRDLSGAVLIIDEIDKQNQVILSELCKQQAQDLIWAIRTL
RANFRDHQLESSPRYDKIEDLFEPLRERLEEFGTNWNLAFAFNTEGANLN
ERPVRLFSDRSFTHVSSATHKLSLKSDFLRRKNLIFSDEKVEGSLIEKHG
LLTRFVNEADVIYQWFLGTMRKAVFQYWENVRGLEIEVRENRSLEGTFQE
AVQSLLTHFNLQEFESAVYESFDTRGLRQSAGGKANKLSSSKSYHHTGLK
LVEVAHNQGTRDTVNCKASFLNTSPSGVLADMVDAGAVILGISATARADT
VIHNFDFKYLNERLGNKLLSLSREQKQRVNNYYHSRRNYKDNGVVLTVKY
LNSRDAFLDALLEEYKPEARSSHFILNHYLGIAESEQAFVRSWLSKLLAS
IKAFISSPDNRYMLSLLNRTLDTTRQNINDFIQFCCDKWAKEFNVKTKTF
FGVNADWMRLVGYDEISKHLNTELGKVVVFSTYASMGAGKNPDYAVNLAL
EGESLISVADVTYSTQLRSDIDSIYLEKPTQLLLSDDYSHTANQLCQFHQ
ILSLQENGELSPKSAENWCRQQLMGMSRERSLQQYHQTSDYQSAVRKYIE
QAVGRAGRTSLKRKQILLFVDSGLKEILAEESRDPSLFSHEYVALVNKAK
SAGKSIVEDRAVRRLFNLAQRNNKDGMLSIKALVHRLHNQPASKSDIQEW
QDIRTQLLRYPTVAFQPERFNRLYLQSMTKGYYRYQGNLDGDPNSFEFFD
RVPYGDMVSEEDCSLATLVQNQYVRPWFERKGFACSWQKEANVMTPIMFT
NIYKGALGEQAVEAVLTAFDFTFEEVPNSIYERFDNRVIFAGIEQPIWLD
SKYWKHEGNESSEGYSSKIALVEEEFGPSKFIYVNALGDTSKPIRYLNSC
FVETSPQLAKVIEIPALIDDSNADTNRTAVQELIKWLHHS

Ligand information

>9bf5 Chain B (length=12) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

tgaggagtccat

Receptor-Ligand Complex Structure

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Structure summary

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PDB	9bf5 DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Resolution	3.07 Å
Binding residue (original residue number in PDB)	Y194 K246 F639 R669 T780 Q781 R828 E829 R830 Q833
Binding residue (residue number reindexed from 1)	Y194 K246 F639 R669 T780 Q781 R828 E829 R830 Q833

External links

PDB	RCSB:9bf5, PDBe:9bf5, PDBj:9bf5
PDBsum	9bf5
PubMed	39173632
UniProt	B9TSM3

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