Structure of PDB 8ysx Chain D Binding Site BS01

Receptor Information
>8ysx Chain D (length=200) Species: 9615 (Canis lupus familiaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAAD
CQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMI
CGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEE
AYELGRRAITYATHRDSYSGGIINMYHMKEDGWVKVESTDVNELLHQYQE
Ligand information
Ligand IDA1L0D
InChIInChI=1S/C20H38BN5O5/c1-14(17(22)13-27)31-21(29,30)19(15-8-4-2-5-9-15)23-20(28)18-12-26(25-24-18)16-10-6-3-7-11-16/h12,14-17,19,27,29H,2-11,13,22,30H2,1H3,(H,23,28)/t14-,17-,19+/m1/s1
InChIKeyFHUGSJNRJRMQPB-BJZITVGISA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH](O[B-](O)([OH2+])[CH](NC(=O)c1cn(nn1)C2CCCCC2)C3CCCCC3)[CH](N)CO
CACTVS 3.385C[C@@H](O[B-](O)([OH2+])[C@@H](NC(=O)c1cn(nn1)C2CCCCC2)C3CCCCC3)[C@H](N)CO
OpenEye OEToolkits 2.0.7B(C(C1CCCCC1)NC(=O)c2cn(nn2)C3CCCCC3)([OH2])(O)OC(C)C(CO)N
OpenEye OEToolkits 2.0.7B([C@H](C1CCCCC1)NC(=O)c2cn(nn2)C3CCCCC3)([OH2])(O)O[C@H](C)[C@@H](CO)N
FormulaC20 H38 B N5 O5
Name[(2~{R},3~{R})-3-azanyl-4-oxidanyl-butan-2-yl]oxy-[(~{R})-cyclohexyl-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]methyl]-$l^{3}-oxidanyl-oxidanyl-boron
ChEMBL
DrugBank
ZINC
PDB chain8ysx Chain D Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ysx Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
T2 D17 A20 T21 K33 M45 S46 G47 A49 G129 S130 Y169 S170
Binding residue
(residue number reindexed from 1)
T1 D16 A19 T20 K32 M44 S45 G46 A48 G128 S129 Y168 S169
Annotation score1
External links
PDB RCSB:8ysx, PDBe:8ysx, PDBj:8ysx
PDBsum8ysx
PubMed38906067
UniProtQ5W416|PSB8_CANLF Proteasome subunit beta type-8 (Gene Name=PSMB8)

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