Structure of PDB 8u16 Chain D Binding Site BS01

Receptor Information
>8u16 Chain D (length=346) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFA
VLAYSQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQ
SDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKSYKWWQKYQKRK
FHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFS
YRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEI
TTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWF
PGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIP
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8u16 Chain D Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8u16 Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		C323 C326 C391 C394
Binding residue
(residue number reindexed from 1)		C242 C245 C310 C313
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8u16, PDBe:8u16, PDBj:8u16
PDBsum8u16
PubMed38086859
UniProtQ96SW2|CRBN_HUMAN Protein cereblon (Gene Name=CRBN)

[Back to BioLiP]