Structure of PDB 8tqp Chain D Binding Site BS01

Receptor Information
>8tqp Chain D (length=214) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQ
DLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVGPIAPGQMREPRGS
DIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILD
IRQGPKEPFRDYVDRFYKTLRAEQASQEVKNTETLLVQNANPDCKTILKA
LGPATLEEMMTACQ
Ligand information
Ligand IDK3L
InChIInChI=1S/C35H32F2N6O6S/c1-49-27-10-8-26(9-11-27)43-34(40-30-5-3-2-4-29(30)35(43)46)31(18-22-16-23(36)19-24(37)17-22)39-32(44)20-41-14-15-42(21-33(41)45)50(47,48)28-12-6-25(38)7-13-28/h2-13,16-17,19,31H,14-15,18,20-21,38H2,1H3,(H,39,44)/t31-/m1/s1
InChIKeyFITQNIJOJSIEEB-WJOKGBTCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7COc1ccc(cc1)N2C(=O)c3ccccc3N=C2C(Cc4cc(cc(c4)F)F)NC(=O)CN5CCN(CC5=O)S(=O)(=O)c6ccc(cc6)N
CACTVS 3.385COc1ccc(cc1)N2C(=O)c3ccccc3N=C2[C@H](Cc4cc(F)cc(F)c4)NC(=O)CN5CCN(CC5=O)[S](=O)(=O)c6ccc(N)cc6
CACTVS 3.385COc1ccc(cc1)N2C(=O)c3ccccc3N=C2[CH](Cc4cc(F)cc(F)c4)NC(=O)CN5CCN(CC5=O)[S](=O)(=O)c6ccc(N)cc6
OpenEye OEToolkits 2.0.7COc1ccc(cc1)N2C(=O)c3ccccc3N=C2[C@H](Cc4cc(cc(c4)F)F)NC(=O)CN5CCN(CC5=O)S(=O)(=O)c6ccc(cc6)N
ACDLabs 12.01O=S(=O)(c1ccc(N)cc1)N1CC(=O)N(CC(=O)NC(Cc2cc(F)cc(F)c2)C2=Nc3ccccc3C(=O)N2c2ccc(OC)cc2)CC1
FormulaC35 H32 F2 N6 O6 S
Name2-[4-(4-aminobenzene-1-sulfonyl)-2-oxopiperazin-1-yl]-N-{(1R)-2-(3,5-difluorophenyl)-1-[3-(4-methoxyphenyl)-4-oxo-3,4-dihydroquinazolin-2-yl]ethyl}acetamide
ChEMBL
DrugBank
ZINC
PDB chain8tqp Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8tqp Discovery, Crystallographic Studies, and Mechanistic Investigations of Novel Phenylalanine Derivatives Bearing a Quinazolin-4-one Scaffold as Potent HIV Capsid Modulators.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
R173 K182 N183
Binding residue
(residue number reindexed from 1)
R171 K180 N181
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
3.4.23.16: HIV-1 retropepsin.
Gene Ontology

View graph for
Biological Process
External links
PDB RCSB:8tqp, PDBe:8tqp, PDBj:8tqp
PDBsum8tqp
PubMed38054267
UniProtP12497|POL_HV1N5 Gag-Pol polyprotein (Gene Name=gag-pol)

[Back to BioLiP]