Structure of PDB 8std Chain D Binding Site BS01

Receptor Information

>8std Chain D (length=204) Species: 220668 (Lactiplantibacillus plantarum WCFS1)

NGFPEVIYGAGKTATQIVGIVQALSQQLPILTTRLSAEKFAALQPALPTA
VYHATAQCMTVGEQPAPKTPGYIAVVTAGTADQPVAEEAAVTAETFGNRV
ERVYDVGVAGIHRLFAKLDVIRGARVVIVIAGMEGALASVVGGLVDKPVI
AVPTSVGYGTSFQGMTALLTMLNSCASGITVVNIDNGFGAAYSASMVNQM
ASWS

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 8std Chain D Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8std Structure of the LarB-Substrate Complex and Identification of a Reaction Intermediate during Nickel-Pincer Nucleotide Cofactor Biosynthesis.
• Resolution: 2.65 Å
• Binding residue (original residue number in PDB): G188 V191 S223
• Binding residue (residue number reindexed from 1): G142 V145 S177
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.5.1.143: pyridinium-3,5-biscarboxylic acid mononucleotide synthase.

Gene Ontology

Molecular Function

• GO:0016740 transferase activity
• GO:0016787 hydrolase activity

Biological Process

• GO:0006189 'de novo' IMP biosynthetic process

Cellular Component

• GO:0005886 plasma membrane

External links

• PDB: RCSB:8std, PDBe:8std, PDBj:8std
• PDBsum: 8std
• PubMed: 37831946
• UniProt: F9UST0|LARB_LACPL Pyridinium-3,5-biscarboxylic acid mononucleotide synthase (Gene Name=larB)