Structure of PDB 8q4d Chain D Binding Site BS01

Receptor Information
>8q4d Chain D (length=373) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRK
QRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKP
FRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYS
RMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGV
VKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFE
SIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSY
LSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEIS
HVDQQKKVISFAEKIKKKQTEMA
Ligand information
>8q4d Chain a (length=118) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ccttctggggaattttaaaccggcgattttggggaaaaaataatcggcct
tgacagctgcacagtaagagaattatgcagtgctgccataaccatgagtg
ataacactgcggccaact
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q4d Molecular basis for transposase activation by a dedicated AAA+ ATPase.
Resolution3.62 Å
Binding residue
(original residue number in PDB)		R35 R49 R52 K53 S54 K55 L56 T88 G89 G90 T92 I93 R304 K305 H307 S313 Y314 K315
Binding residue
(residue number reindexed from 1)		R35 R49 R52 K53 S54 K55 L56 T88 G89 G90 T92 I93 R304 K305 H307 S313 Y314 K315
Gene Ontology
Biological Process
GO:0006310 DNA recombination
GO:0032196 transposition

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Molecular Function
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Biological Process
External links
PDB RCSB:8q4d, PDBe:8q4d, PDBj:8q4d
PDBsum8q4d
PubMed38926614
UniProtQ45618|TRA6_GEOSE Putative transposase for insertion sequence element IS5376

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