Structure of PDB 8kd9 Chain D Binding Site BS01

Receptor Information
>8kd9 Chain D (length=188) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTE
MRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGL
RIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYE
LDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVR
Ligand information
>8kd9 Chain M (length=73) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaggcgcguagcucaguagggagagcgccggcccgacacgccggaggucg
gggguucaaguccccccgcgccu
..<<<<<<..<<<<........>>>>.<<<<.........>>>>.....<
<<<<.......>>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8kd9 Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
Resolution2.87 Å
Binding residue
(original residue number in PDB)		G118 A122 R125 R129
Binding residue
(residue number reindexed from 1)		G117 A121 R124 R128
External links
PDB RCSB:8kd9, PDBe:8kd9, PDBj:8kd9
PDBsum8kd9
PubMed
UniProtO67035|RFRNP_AQUAE RNA-free ribonuclease P (Gene Name=aq_880)

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