Structure of PDB 8idp Chain D Binding Site BS01

Receptor Information

>8idp Chain D (length=445) Species: 128442 (Talaromyces pinophilus)

WSYSQTLSANIQVNALQRYQEMIGGGCSGAFGWACQQFPTGLTPENQEEV
TKILFDENIGGLSIVRNDIGSSPGSTILPTCPATPAGPFNYQWDGSDSCQ
FNLTKTALKYNPELYVYANAWSAPGCMKTVGTENDGGQICGVRGTNCTYD
WRQAYADYLVQYVKFYQAEGIDISLLGAWNEPDFNPVTYESMESDGFQAK
DFLEILYPTVKKAFPNLDVSCCDATGARQERNILYEVQQAGGEHFFDVAT
WHNYQSSPERPFNVVGKPNIMTEWADGSGPWNTTWDVSGQLAEGLQWALY
MHNAFTNSDTSGYNHWWCAGGGADNVLISITGNSYEVSSRLWAFASYFRF
ARPGSVRIGATSSVENVYVSAYENKNGTVSIPVINAAHFPYEVTIDLQGL
KARKRVSTFLTDNSHNVTLMDQSELHGSVLKATVPPRAVQVFWLE

Ligand information

• Ligand ID: BMA
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-RWOPYEJCSA-N
• SMILES:
  CACTVS 3.341: OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-mannopyranose;
  beta-D-mannose;
  D-mannose;
  mannose
• ZINC: ZINC000003830679
• PDB chain: 8idp Chain N Residue 3

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8idp Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
• Resolution: 1.8 Å
• Binding residue (original residue number in PDB): E74 N75
• Binding residue (residue number reindexed from 1): E57 N58
• Annotation score: 5

Gene Ontology

Molecular Function

• GO:0004348 glucosylceramidase activity
• GO:0016798 hydrolase activity, acting on glycosyl bonds

Biological Process

• GO:0006665 sphingolipid metabolic process
• GO:0045493 xylan catabolic process

External links

• PDB: RCSB:8idp, PDBe:8idp, PDBj:8idp
• PDBsum: 8idp
• PubMed: 37144255
• UniProt: A0A0B8MZ29