Structure of PDB 8g6h Chain D Binding Site BS01

Receptor Information
>8g6h Chain D (length=95) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRL
AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTCYTSAK
Ligand information
>8g6h Chain I (length=157) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ccgcccatcagaatcccggtgccgaggccgctcaattggtcgtagacagc
tctagcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgc
caaggggattactccctagtctccaggcacgtgtcagatatatacatcga
ttgccgg
Receptor-Ligand Complex Structure
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PDB8g6h Ubiquitinated H2B as gatekeeper of the nucleosome acidic patch
Resolution3.06 Å
Binding residue
(original residue number in PDB)		T29 Y39 S52 S53 R83 T85
Binding residue
(residue number reindexed from 1)		T2 Y12 S25 S26 R56 T58
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

View graph for
Molecular Function
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Cellular Component
External links
PDB RCSB:8g6h, PDBe:8g6h, PDBj:8g6h
PDBsum8g6h
PubMed39149911
UniProtP02281|H2B11_XENLA Histone H2B 1.1

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