Structure of PDB 8fmh Chain D Binding Site BS01

Receptor Information
>8fmh Chain D (length=357) Species: 317 (Pseudomonas syringae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FNTNDETKRIVWTQTAGHCELCGTDLTFDYRAGKPMKWGEVAHILPASPK
GPDTANLMLLCPGCHDKIDRDADGYPENDLSGLHQAYLERIRLAATTPDG
GRAIPLIVQSQHFQTINDIPVRDLLTAMSAEGLTAFDQGIKIAFAAPGPR
GRDTTYWQNVKDSVQYELEQQLKRRGGTYGDSPALAVVGLADIPALMMLG
QSIGDRSKRLIFSFHREHLLRWPDQSAEPPSFLFTPPPNGDGPLALVLSI
SAQVPVRDVTDALPGARIAELSIPEPSYAMVQNRRVIHAFRDALQIRLSQ
LEALTPDPIHVFAAIPAALAIEFGALLTTQHQHTYLIFDRDKENQDRFTQ
TLQLGPV
Ligand information
Ligand ID4UR
InChIInChI=1S/C20H24N10O13P2/c21-14-8-15(24-3-23-14)29(4-25-8)19-13-10(31)6(40-19)1-38-44(34,35)42-12-7(2-39-45(36,37)43-13)41-18(11(12)32)30-5-26-9-16(30)27-20(22)28-17(9)33/h3-7,10-13,18-19,31-32H,1-2H2,(H,34,35)(H,36,37)(H2,21,23,24)(H3,22,27,28,33)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1
InChIKeyFAFONCPHZLORMH-INFSMZHSSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.9.2c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)O)O[C@H]([C@@H]5O)n6cnc7c6N=C(NC7=O)N)O)O)N
OpenEye OEToolkits 1.9.2c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5O)n6cnc7c6N=C(NC7=O)N)O)O)N
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@@H]5[C@H](O)[C@@H](CO[P](O)(=O)O[C@H]4[C@H]3O)O[C@H]5n6cnc7c(N)ncnc67
ACDLabs 12.01C45C(C(OP(OCC3C(C(C(n2c1N=C(N)NC(c1nc2)=O)O3)O)OP(OC4)(=O)O)(O)=O)C(O5)n6c7c(nc6)c(ncn7)N)O
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](CO[P](O)(=O)O[CH]4[CH]3O)O[CH]5n6cnc7c(N)ncnc67
FormulaC20 H24 N10 O13 P2
Name3'2'-cGAMP;
2-amino-9-[(2S,5R,7R,8R,10R,12aR,14R,15R,15aS,16R)-7-(6-amino-9H-purin-9-yl)-2,10,15,16-tetrahydroxy-2,10-dioxidooctahydro-12H-5,8-methanofuro[3,2-l][1,3,6,9,11,2,10]pentaoxadiphosphacyclotetradecin-14-yl]-1,9-dihydro-6H-purin-6-one
ChEMBLCHEMBL4449197
DrugBank
ZINCZINC000263620397
PDB chain8fmh Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8fmh Activation of CBASS-Cap5 endonuclease immune effector by cyclic nucleotides: A view at high resolution
Resolution1.87 Å
Binding residue
(original residue number in PDB)
D231 R232 T355 Q356 H357
Binding residue
(residue number reindexed from 1)
D205 R206 T329 Q330 H331
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8fmh, PDBe:8fmh, PDBj:8fmh
PDBsum8fmh
PubMed38321146
UniProtA0A2P0QGK5

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