Structure of PDB 8f22 Chain D Binding Site BS01

Receptor Information
>8f22 Chain D (length=205) Species: 11698 (Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PIVQNGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDL
NTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVGQMREPRGSDIAGTTS
TLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKE
PFRDYVDRFYKTLRAEQASQATETLLVQNANPDCKTILKALGPGATLEEM
MTACQ
Ligand information
Ligand IDXBQ
InChIInChI=1S/C29H33N5O6S/c1-32(23-10-12-24(40-2)13-11-23)29(37)26(18-21-6-4-3-5-7-21)31-27(35)19-33-16-17-34(20-28(33)36)41(38,39)25-14-8-22(30)9-15-25/h3-15,26H,16-20,30H2,1-2H3,(H,31,35)/t26-/m0/s1
InChIKeyREXBCEZWZOLFMN-SANMLTNESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CN(c1ccc(cc1)OC)C(=O)[C@H](Cc2ccccc2)NC(=O)CN3CCN(CC3=O)S(=O)(=O)c4ccc(cc4)N
CACTVS 3.385COc1ccc(cc1)N(C)C(=O)[C@H](Cc2ccccc2)NC(=O)CN3CCN(CC3=O)[S](=O)(=O)c4ccc(N)cc4
OpenEye OEToolkits 2.0.7CN(c1ccc(cc1)OC)C(=O)C(Cc2ccccc2)NC(=O)CN3CCN(CC3=O)S(=O)(=O)c4ccc(cc4)N
CACTVS 3.385COc1ccc(cc1)N(C)C(=O)[CH](Cc2ccccc2)NC(=O)CN3CCN(CC3=O)[S](=O)(=O)c4ccc(N)cc4
ACDLabs 12.01O=S(=O)(c1ccc(N)cc1)N1CC(=O)N(CC(=O)NC(Cc2ccccc2)C(=O)N(C)c2ccc(OC)cc2)CC1
FormulaC29 H33 N5 O6 S
NameNalpha-{[4-(4-aminobenzene-1-sulfonyl)-2-oxopiperazin-1-yl]acetyl}-N-(4-methoxyphenyl)-N-methyl-L-phenylalaninamide
ChEMBLCHEMBL4471665
DrugBank
ZINC
PDB chain8f22 Chain D Residue 300 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8f22 Structure of a benzosulfonamide based inhibitor - bound to a disulfide stabilised HIV-1 capsid hexamer
Resolution2.5 Å
Binding residue
(original residue number in PDB)
N53 L56 N57 M66 Q67 L69 K70 N74 A105 T107 Y130
Binding residue
(residue number reindexed from 1)
N51 L54 N55 M64 Q65 L67 K68 N72 A96 T98 Y121
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
3.4.23.16: HIV-1 retropepsin.
Gene Ontology

View graph for
Biological Process
External links
PDB RCSB:8f22, PDBe:8f22, PDBj:8f22
PDBsum8f22
PubMed
UniProtP12497|POL_HV1N5 Gag-Pol polyprotein (Gene Name=gag-pol)

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