Structure of PDB 8epx Chain D Binding Site BS01

Receptor Information

>8epx Chain D (length=506) Species: 2070761 (Paucibacter aquatile) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PYDHNAEADFAASEVARMLVADPGLCYDAASLPASISASASYEPSAAGWP
KADGLVSVLEGGTSTQRAIALEYKRPQEGIHGLLTAIGQAHGYLHKGYSG
AAIVIPGRYSSHPTPAEYVRDVLNAISGSRAIAVFSYSPPDTTSPTPFAG
RIQCVRPLVFDVHLRPANQGPKTQWVHMREGSTTRDAFFRFLQVAKRLSA
DPTAPRPTLRSELVAAIGRLAPGRDPIEYITNTADNKFLTKVWQFFWLEW
LATPAVLTPWKLEAGVYSAPGARTRILREDGTDFSQLWEGRVNSLKETIA
GMLNRGEISEAQGWEAFVGGISATGGGQDKQGVRARAHSYREDIDSALAQ
LRWIEDDGLPTDQGYRFMTICERYGGANSRAAIDYMGATLIQTGRYASFL
HYINRLSERKFAENPLAYTKPGPGGMPVFTEESYWEYLQDLETKLTDELR
VMRKVSGRARPRVRTTFQVELTLLRNYGFVSSTRHRLGVGIPIDWEQVVQ
ALNVDL

Ligand information

>8epx Chain K (length=23) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

cctcgcgtggcgcaggtgggaag

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8epx Structures, activity and mechanism of the Type IIS restriction endonuclease PaqCI.
Resolution	3.15 Å
Binding residue (original residue number in PDB)	Y3 S46 I81 H82 T177 H181 R183 V296 H342 E346 D347 S350 K458 V459 R462 R464 P465 R466 V467 R468
Binding residue (residue number reindexed from 1)	Y2 S45 I80 H81 T173 H177 R179 V292 H338 E342 D343 S346 K454 V455 R458 R460 P461 R462 V463 R464

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:8epx, PDBe:8epx, PDBj:8epx
PDBsum	8epx
PubMed	36987874
UniProt	A0A2N8KYF9

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