Structure of PDB 8dfs Chain D Binding Site BS01

Receptor Information
>8dfs Chain D (length=286) Species: 882 (Nitratidesulfovibrio vulgaris str. Hildenborough) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRK
IRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVE
DAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQ
EVSITRMAVTTKAEAEDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSD
EDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDL
VKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
Ligand information
>8dfs Chain L (length=48) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggauugaaacgccaugcucaggcuggcgagugcgcgccacucaucaag
................................................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8dfs Structural snapshots of R-loop formation by a type I-C CRISPR Cascade.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		N22 G23 P25 N29 R32 V45 C46 R49 R52 I69 F119 V122 Q131 V132 R133 Q137 I154 T155 R156 S223 A224 R226
Binding residue
(residue number reindexed from 1)		N22 G23 P25 N29 R32 V45 C46 R49 R52 I69 F119 V122 Q131 V132 R133 Q137 I154 T155 R156 S219 A220 R222
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0043571 maintenance of CRISPR repeat elements

View graph for
Biological Process
External links
PDB RCSB:8dfs, PDBe:8dfs, PDBj:8dfs
PDBsum8dfs
PubMed36805026
UniProtQ72WF7

[Back to BioLiP]