Structure of PDB 8cm6 Chain D Binding Site BS01

Receptor Information
>8cm6 Chain D (length=214) Species: 882 (Nitratidesulfovibrio vulgaris str. Hildenborough) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKMFFVDLSRCTACRGCQIACKQWKNLPAEETRNTGSHQNPPDLSYVTLK
TVRFTEKSRKGPGIDWLFFPEQCRHCVEPPCKGQADVDLEGAVVKDETTG
AVLFTELTAKVDGESVRSACPYDIPRIDPVTKRLSKCDMCNDRVQNGLLP
ACVKTCPTGTMNFGDEQEMLALAEKRLAEVKKTYPGAVLGDPNDVRVVYL
FTRDPKDFYEHAVA
Ligand information
Ligand IDARF
InChIInChI=1S/CH3NO/c2-1-3/h1H,(H2,2,3)
InChIKeyZHNUHDYFZUAESO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(=O)N
CACTVS 3.341NC=O
ACDLabs 10.04O=CN
FormulaC H3 N O
NameFORMAMIDE
ChEMBLCHEMBL266160
DrugBank
ZINC
PDB chain8cm6 Chain C Residue 1113 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8cm6 W-formate dehydrogenase C872A from Desulfovibrio vulgaris - with Formamide
Resolution1.416 Å
Binding residue
(original residue number in PDB)		R60 P63
Binding residue
(residue number reindexed from 1)		R59 P62
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:8cm6, PDBe:8cm6, PDBj:8cm6
PDBsum8cm6
PubMed37985883
UniProtQ72EJ0

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