Structure of PDB 8c8q Chain D Binding Site BS01

Receptor Information

>8c8q Chain D (length=121) Species: 4896 (Schizosaccharomyces pombe) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VKAAAQELANAKEPSDLIGPGGRDGEVPTDLEQATGLERYELLSELSGRD
AFDMKPLDASRKGTLTDPIMVTSLDPYRHIGCTGSPSGSHNLIWMTVYKD
KLRRCPECGSVYKLKFMGDPN

Ligand information

InChI=1S/Zn/q+2

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Zn

Name

ZINC ION

PDB chain

8c8q Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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PDB	8c8q Cryo-EM structure and function of S. pombe complex IV with bound respiratory supercomplex factor.
Resolution	3.36 Å
Binding residue (original residue number in PDB)	H128 C143
Binding residue (residue number reindexed from 1)	H90 C105
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004129	cytochrome-c oxidase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006119	oxidative phosphorylation
GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
GO:1902600	proton transmembrane transport

	Cellular Component
GO:0005739	mitochondrion
GO:0005740	mitochondrial envelope
GO:0005743	mitochondrial inner membrane
GO:0045277	respiratory chain complex IV

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Molecular Function

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Cellular Component

External links

PDB	RCSB:8c8q, PDBe:8c8q, PDBj:8c8q
PDBsum	8c8q
PubMed	36797353
UniProt	P79010\|COX4_SCHPO Cytochrome c oxidase subunit 4, mitochondrial (Gene Name=cox4)

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