Structure of PDB 8aym Chain D Binding Site BS01

Receptor Information
>8aym Chain D (length=405) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTI
VGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKP
FMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVS
RFSPYEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIIS
SYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKI
AVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQ
RKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKN
KWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEF
CYKSR
Ligand information
Ligand IDZK1
InChIInChI=1S/C14H15F3N3O6P/c15-14(16,17)8-5-9-11(6-10(8)19-1-3-26-4-2-19)20(7-27(23,24)25)13(22)12(21)18-9/h5-6H,1-4,7H2,(H,18,21)(H2,23,24,25)
InChIKeyWZMQMKNCWDCCMT-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.352O[P](O)(=O)CN1C(=O)C(=O)Nc2cc(c(cc12)N3CCOCC3)C(F)(F)F
OpenEye OEToolkits 1.7.0c1c(c(cc2c1NC(=O)C(=O)N2CP(=O)(O)O)N3CCOCC3)C(F)(F)F
FormulaC14 H15 F3 N3 O6 P
Name{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid;
[[3,4-Dihydro-7-(4-morpholinyl)-2,3-dioxo-6-(trifluorom ethyl)-1(2H)-quinoxalinyl]methyl]phosphonic acid
ChEMBLCHEMBL19892
DrugBankDB12393
ZINCZINC000002004553
PDB chain8aym Chain D Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8aym Modulatory mechanisms of TARP gamma 8-selective AMPA receptor therapeutics.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		Y405 Y450 P478 L479 T480 R485 G653 S654 M708 Y732
Binding residue
(residue number reindexed from 1)		Y11 Y56 P84 L85 T86 R91 G239 S240 M294 Y318
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0015276 ligand-gated monoatomic ion channel activity
GO:0038023 signaling receptor activity
Biological Process
GO:0006811 monoatomic ion transport
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8aym, PDBe:8aym, PDBj:8aym
PDBsum8aym
PubMed36966141
UniProtP19491|GRIA2_RAT Glutamate receptor 2 (Gene Name=Gria2)

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