Structure of PDB 7yrj Chain D Binding Site BS01

Receptor Information

>7yrj Chain D (length=204) Species: 9606 (Homo sapiens)

SRIKWAIDYITKYFFTEGIYLQKRQREQRLLESYRAEGKLGEVQCRLMEE
PPDRLHVLDVGSCFNPFSSAPHLEVTALDLCPATEDVLQADFLKVEVVPG
IREPELEEGSVRRLPASHYECVIFSLLLEYMPSAEQRLQCCLQAYDLLLP
EGILVLITPDMKNWRYSLARIGLLRVRFEKLPHISCMVFRKAISRELSQH
WASI

Ligand information

• Ligand ID: SFG
• InChI: InChI=1S/C15H23N7O5/c16-6(1-2-7(17)15(25)26)3-8-10(23)11(24)14(27-8)22-5-21-9-12(18)19-4-20-13(9)22/h4-8,10-11,14,23-24H,1-3,16-17H2,(H,25,26)(H2,18,19,20)/t6-,7-,8+,10+,11+,14+/m0/s1
• InChIKey: LMXOHSDXUQEUSF-YECHIGJVSA-N
• SMILES:
  OpenEye OEToolkits 1.7.0: c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C[C@H](CC[C@@H](C(=O)O)N)N)O)O)N
  OpenEye OEToolkits 1.7.0: c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CC(CCC(C(=O)O)N)N)O)O)N
  CACTVS 3.370: N[CH](CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
  CACTVS 3.370: N[C@@H](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
  ACDLabs 12.01: O=C(O)C(N)CCC(N)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O
• Formula: C15 H23 N7 O5
• Name: SINEFUNGIN;
  ADENOSYL-ORNITHINE
• ChEMBL: CHEMBL1214186
• DrugBank: DB01910
• ZINC: ZINC000004217451
• PDB chain: 7yrj Chain D Residue 401

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7yrj S-adenosylmethionine sensor upstream of mTORC1
• Resolution: 2.35 Å
• Binding residue (original residue number in PDB): R73 G132 D150 L151 D162 S196 L197 L198 Y201 M202
• Binding residue (residue number reindexed from 1): R2 G61 D79 L80 D91 S125 L126 L127 Y130 M131
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.1.1.-

External links

• PDB: RCSB:7yrj, PDBe:7yrj, PDBj:7yrj
• PDBsum: 7yrj
• UniProt: Q9W138|SAMTR_DROME S-adenosylmethionine sensor upstream of mTORC1 (Gene Name=Samtor)