Structure of PDB 7vm1 Chain D Binding Site BS01

Receptor Information
>7vm1 Chain D (length=182) Species: 208964 (Pseudomonas aeruginosa PAO1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SISISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGFNPGPF
DGSQYALKSTASDAAFIAGGDLHYTLFSNPSHTLWGKLDSIALGDTLTGG
ASSGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVYGLMSGDSSALQGQ
IDALLKAVDPSLSINSTFDQLAAAGVAHATPA
Ligand information
Ligand ID7OH
InChIInChI=1S/C40H24N8.Fe/c1-2-30-38(26-11-19-42-20-12-26)32-5-6-34(47-32)40(28-15-23-44-24-16-28)36-8-7-35(48-36)39(27-13-21-43-22-14-27)33-4-3-31(46-33)37(29(1)45-30)25-9-17-41-18-10-25;/h1-24H;/q-2;+2/b37-29-,37-31-,38-30-,38-32-,39-33-,39-35-,40-34-,40-36-;
InChIKeyDUVWLFDRXHMGJM-GFPSKMGBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc2n3c1C(=C4C=CC5=[N]4[Fe]36N7C(=C5c8ccncc8)C=CC7=C(C9=[N]6C(=C2c1ccncc1)C=C9)c1ccncc1)c1ccncc1
CACTVS 3.385[Fe]1N2C3=C(c4ccncc4)C5=NC(=C(c6ccncc6)c7ccc(n17)C(=C8C=CC(=N8)C(=C2C=C3)c9ccncc9)c%10ccncc%10)C=C5
FormulaC40 H24 Fe N8
NameFe-Tetra(4-pyridyl)porphyrin
ChEMBL
DrugBank
ZINC
PDB chain7vm1 Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7vm1 Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Resolution2.0 Å
Binding residue
(original residue number in PDB)
H32 P34 V37 T43 P50 F51 Y75 H83 L85 R129 H134 V137 Y138 M141
Binding residue
(residue number reindexed from 1)
H31 P33 V36 T42 P49 F50 Y74 H82 L84 R128 H133 V136 Y137 M140
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7vm1, PDBe:7vm1, PDBj:7vm1
PDBsum7vm1
PubMed35352458
UniProtG3XD33

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