Structure of PDB 7vlx Chain D Binding Site BS01

Receptor Information
>7vlx Chain D (length=298) Species: 1639 (Listeria monocytogenes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ELSKRDRLRVAWRSTFIQGSWNYERMQNGGWAFSMIPAIKKLYKTKEDRS
SALKRHLEFFNTHPYIASPILGVTLALEEERANGAEVDDVAIQGVKVGMM
GPLAGVGDPVFWFTIRPMLGALGASLALSGNILGPILFFVAWNVIRWGFM
WYTQEFGYKAGSKITDDLSGGLLQDITKGASILGMFVLAALVQRWVNIQF
APIISKVKLDEGAYIDWSHLPQGAQGIKTALQQQQAGLALSEIKVTTLQN
NLDNLIPGLAAVALTFLCMWLLKKKISPIIIILGLFVVGIVGHLIGLL
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain7vlx Chain D Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7vlx Structural Basis of Pore Formation in the Mannose Phosphotransferase System by Pediocin PA-1.
Resolution3.12 Å
Binding residue
(original residue number in PDB)		Q23 W26 Q32 N66 T67 H68 D113
Binding residue
(residue number reindexed from 1)		Q18 W21 Q27 N61 T62 H63 D108
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system
Cellular Component
GO:0016020 membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7vlx, PDBe:7vlx, PDBj:7vlx
PDBsum7vlx
PubMed34851716
UniProtA0A1E8EBU8

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