Structure of PDB 7qiy Chain D Binding Site BS01

Receptor Information
>7qiy Chain D (length=213) Species: 4081 (Solanum lycopersicum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRAT
RTQNVLGDKGRRIRELTSVVQKRFNFDENTVELYAEKVNNRGLCAIAQAE
SLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFK
DGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTP
LPDLVTIHPPKEE
Ligand information
>7qiy Chain 2 (length=474) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uugacggaagggcaccaccaggaguggagccugcggcuuaauuugacuca
acacggggaaacuuaccagguccagacauaguagacugagagcucuuucu
augggugguggugcauggccguucuuaguugguauuugucugguuaauuc
cguuaacgaacgagaccucagccugcuaacuagcuaugcggagguucccu
ucgcggccagcuucuuagagggacuacggccuuuuaggccgcggaaguuu
gaggcaauaacaggucugugaugcccuuagauguucugggccgcacgcgc
gcuacacugauguauucaacgagcuuauagccuuggccgacaggcccggg
uaaucuuugaaauuucaucgugauggggauagaucauugcaauuguuggu
cuucaacgaggaauuccuaguaagcgcgagucaucagcucgcguugacua
cgucccugcccuuuguacacaccg
.<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<........<<.....
...>>..........<<<<<......<<<<<.<<........>>....>>
>>>...<<.<<<..<<.<<<<<<....<<<.<<.......<<<......>
>>...>>.>>>....<<<<<.<<..<<<<..<<<<.<<<<<<<<...>>>
>>>>>...>>>>..>>>>.>>.....<<<<<.....>>>>>........>
>>>>....>>>.>>>.....>>>>>>>.......>>>>>......>>>>.
>>>.....<<<<.<.......<<.......<<<.<<<<....>>>>.>>>
....>>.......>.>>>>...........<<<<<<..........>>>>
>>..........>>>>>>....<<<<<<<<.......>>>>>>>>.....
.>>...>>>>>>>>>>.>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7qiy Cryo-EM structure and rRNA modification sites of a plant ribosome.
Resolution2.58 Å
Binding residue
(original residue number in PDB)		Q7 M8 S9 K10 K11 R12 R30 S142 G143 K144 Q148 R149 A150 K154 Y159 M160 I161 S162 S163 G164 Q165 H177 G183 V184 G186 K188 P208 D209
Binding residue
(residue number reindexed from 1)		Q1 M2 S3 K4 K5 R6 R24 S136 G137 K138 Q142 R143 A144 K148 Y153 M154 I155 S156 S157 G158 Q159 H171 G177 V178 G180 K182 P202 D203
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005634 nucleus
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7qiy, PDBe:7qiy, PDBj:7qiy
PDBsum7qiy
PubMed35643637
UniProtA0A3Q7HBR5

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