Structure of PDB 7pir Chain D Binding Site BS01

Receptor Information
>7pir Chain D (length=153) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FEERIVKLKRISKTTKGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNAI
KKAIKAAHNSLHTIEIHKGSIYHEVIGRSGASRVLLKPAPQGTGIIAGGA
IRAIIELAGYSDIYTKNLGRNTPINMIHATMDGILKQLSPRRVAILRNKN
LNE
Ligand information
>7pir Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>..<<<.<<<<<...<<<<<<........
........<<..<<.<<<<<<....>>>>>>.>>>>.......<<.....
...<.<.<<<..<<........<<.<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<.............>.>>>....<<<<<<...
.>>>>>>.>>.......>>>>>.>.>.<<.....<<<..<<<<<<<<...
....>>>>>>>>>>>.......>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>............
......<<<....<<<<....>>>>..>>>...>.>>>>>...<<<<...
....<<<.....>>>......>>>>...<..<.<<........<<<<<<<
..........>>>>>>>.........>>>....>.....<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>.....
......<<<(......<<<<...<<<.<<<<<<..<<<<<.<<<<.....
<<<<<<<.....>>>>>>>..>>>>.>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<<<<..<<........>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>....<<<<<<<.......<<<<.........>>>>....>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
.)>>.....>>>>>>.>>>.<<<.......<<<....>>>.....>>>..
..))).]<<.<<.<<<<<<<.....<<<....<<<<<<<<<<......<<
........>>..........<<<<<<.........<<<<<....<<<.<<
....>>.>>>.>>>>>....<<<.<<<..<<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.
........>>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>...>>>>>>>>>>....>>>>>>...>>.>>>>>>>>.....<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>......<....<<<<<<<........>>>>>>>....>.......>
>>.....<<<<<<<..........>>>>>>>...........>>>>>>>>
>..>>....<..<<.<.<<<<.<....<<<<<<..<<<<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>.>>>..>>>>>>....>.>>>>
..>.>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pir Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution12.1 Å
Binding residue
(original residue number in PDB)		I76 S77 K78 T79 T80 K81 G82 R84 R87 K107 N113 K117 G145 A146 L150 K152 P153 P155 T158 I161 A162 Y179 T180 K181 R185 N186 T187 I189 N190 H193
Binding residue
(residue number reindexed from 1)		I11 S12 K13 T14 T15 K16 G17 R19 R22 K42 N48 K52 G80 A81 L85 K87 P88 P90 T93 I96 A97 Y114 T115 K116 R120 N121 T122 I124 N125 H128
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pir, PDBe:7pir, PDBj:7pir
PDBsum7pir
PubMed36171285
UniProtQ50301|RS5_MYCPN Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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