Structure of PDB 7ph9 Chain D Binding Site BS01

Receptor Information
>7ph9 Chain D (length=153) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FEERIVKLKRISKTTKGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNAI
KKAIKAAHNSLHTIEIHKGSIYHEVIGRSGASRVLLKPAPQGTGIIAGGA
IRAIIELAGYSDIYTKNLGRNTPINMIHATMDGILKQLSPRRVAILRNKN
LNE
Ligand information
>7ph9 Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.((([>.>>>.<<<..<<<<<..<<<<<<<<..<..<<
...<...<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<.<<<..<<.......<<<<<.<<.....<<<<<......>>>>>
......>>.>.....<<<<<<<........>>>>>>>....<<<<<<...
.>>>>>>>>>>......>>>>>.>>>.<<.....<<<...<<<<<<<...
....>>>>>>>.>>>.......>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>....>..>>>..
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
.....<<.....>>.......>>>>...<<..<<<.........<<<<<<
<........>>>>>>>..........>>>...>>.....<<<<<(((...
<<<<<.....<..))).>.......>>>>>>>>>>..>>>>>.>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<.<<..<<<......>>>.....>>.>>>>
>.>..........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>....<<<<<<<...<...<<<<.........>>>>...>>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<.......<<<....>>>.....>>>..
].))).]<<<<<.<<<<<<<..<...<.<...<<<<<<<.........<<
........>>..........<<<<<<<......<<<<.........<<<<
....>>>>......>>.>>.<<<.<<....<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<..
.........>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>>...>>..>>>>>...>>>>>>>.......>>>>>>>.....<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>...........<<<<<<<........>>>>>>>...........>.
>.......<<<<<<..........>>>>>>.......>....>>>>>>>>
>>.>>.......<<.<.<<<<.<<<..<<<<<<..<<<<.....<<<<<.
<<<<..<<....>>.>>>>>>>>>....>>>>..>>>>>>..>>>.>>>>
..>.>>.........<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ph9 Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution8.7 Å
Binding residue
(original residue number in PDB)		K74 S77 K78 T79 K81 G82 R84 R87 R143 G145 K152 A154 P155 I161 A162 R167 Y179 T180 K181 N182 R185 N186 T187
Binding residue
(residue number reindexed from 1)		K9 S12 K13 T14 K16 G17 R19 R22 R78 G80 K87 A89 P90 I96 A97 R102 Y114 T115 K116 N117 R120 N121 T122
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ph9, PDBe:7ph9, PDBj:7ph9
PDBsum7ph9
PubMed36171285
UniProtQ50301|RS5_MYCPN Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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