Structure of PDB 7jqq Chain D Binding Site BS01

Receptor Information

>7jqq Chain D (length=327) Species: 10756 (Salasvirus phi29) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVR
RYKPELAKVSNYFNDVAQEFPDHELVVKGRRFYIDGKLAGWAIPLSVWQS
EKSNAYPNVSTIVFDEFIREKDNSNYIPNEVSALLNLMDTVFRNRERVRC
ICLSNAVSVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKT
RFGRLIDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKFVFSIVYNGFTLGV
WVDVNQGLMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLA
SAFMNGYLRFDNQVIRNIAYELFRKMR

Ligand information

>7jqq Chain N (length=117) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

ggaaugguacgguacuuccauugucauguguauguuggggauuaaacccu
gauugaguucagcccacauacuuuguugauugguugucaaucauggcaaa
agugcacgcuacuuucc

<<<<.<<<<<<<<<<<<...<<<<<<<<....<<.<<<<.........<<
<<......>>>>>>>>>>.......<<<<<.....>>>>>.>>>>>>>>>
>>>>>.>>.>>>>>>>>

Receptor-Ligand Complex Structure

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Structure summary

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PDB	7jqq A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA.
Resolution	4.1 Å
Binding residue (original residue number in PDB)	Q10 L13 S14 Y15 R17 R41 K44 K239 D269 T272
Binding residue (residue number reindexed from 1)	Q7 L10 S11 Y12 R14 R38 K41 K236 D266 T269

Enzymatic activity

Enzyme Commision number

3.6.4.-

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0003723	RNA binding
GO:0005524	ATP binding
GO:0016787	hydrolase activity
GO:0016887	ATP hydrolysis activity

	Biological Process
GO:0019073	viral DNA genome packaging

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Molecular Function

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Biological Process

External links

PDB	RCSB:7jqq, PDBe:7jqq, PDBj:7jqq
PDBsum	7jqq
PubMed	33962953
UniProt	P11014\|PKG16_BPPH2 DNA packaging protein (Gene Name=16)

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