Structure of PDB 7e13 Chain D Binding Site BS01

Receptor Information
>7e13 Chain D (length=475) Species: 72917 (Erigeron canadensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRVKWTKQLNAPLEEIDPEIADIIELEKARQWKGFELIPSENFTSLSVMQ
AVGSVMTNKYSEGYPGARYYGGNEYIDMAERLCQKRALEAFNLDPSKWGV
NVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAV
SIFFETMPYRLDESTGYIDYEQMEKSAVLFRPKLIVAGASAYARVYDYAR
MRKVCDKQKAILLADMAHISGLVAAGVVPSPFEYADVVTTTTHKSLRGPR
GAMIFFRKGLKEINKKGEEVMYDFEDKINQAVFPGLQGGPHNHTIAGLAV
ALKQATTPEYKAYQEQVLANCKRFSQSLIERGYSLVSGGTDNHLVLVNLR
DKGIDGSRVEKVMELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFL
EEDFVKVAELFDASVKLALKIKAASSGTKLKDFVATMNGDEKFQSEIKKI
RGEVEEYAKQFPTIGFEKETMKYKN
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain7e13 Chain C Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7e13 serine hydroxymethyltransferase
Resolution2.86 Å
Binding residue
(original residue number in PDB)		Y98 G326
Binding residue
(residue number reindexed from 1)		Y60 G288
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 00:41:05 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7e13', asym_id = 'D', bs = 'BS01', title = 'serine hydroxymethyltransferase'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7e13', asym_id='D', bs='BS01', title='serine hydroxymethyltransferase')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004372,0019264,0030170,0035999', uniprot = '', pdbid = '7e13', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004372,0019264,0030170,0035999', uniprot='', pdbid='7e13', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>