Structure of PDB 7ddw Chain D Binding Site BS01

Receptor Information
>7ddw Chain D (length=198) Species: 246432 (Staphylococcus equorum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AFELPNLPYGFRALEPHIDQQTMEIHHDKHHNTYVTKLNAAVEGTDLESK
SIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK
IKEQWGSLDAFKEEFANQAAARFGCGWAWLVVNDGKLEIVTTPNQDNPLT
EGKTPILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELYNAAK
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain7ddw Chain D Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7ddw The role of S126 in the Staphylococcus equorum MnSOD activity and stability.
Resolution1.88 Å
Binding residue
(original residue number in PDB)		H27 H81 D161 H165
Binding residue
(residue number reindexed from 1)		H26 H80 D160 H164
Annotation score1
Enzymatic activity
Enzyme Commision number 1.15.1.1: superoxide dismutase.
Gene Ontology
Molecular Function
GO:0004784 superoxide dismutase activity
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
Biological Process
GO:0006801 superoxide metabolic process
GO:0019430 removal of superoxide radicals

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7ddw, PDBe:7ddw, PDBj:7ddw
PDBsum7ddw
PubMed33794368
UniProtA0A1E5TT85

[Back to BioLiP]