Structure of PDB 7cf6 Chain D Binding Site BS01

Receptor Information
>7cf6 Chain D (length=370) Species: 2423 (Fervidobacterium islandicum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIKIIKNAKVFSPEYIGKKDVIFYHKVIHVGEGVHEIYDANGLLLLPGLI
DPHVHITGGGGEGGFETRTPELKISDCIRSGVTTVVGCLGTDGITRSLEN
LYAKAKSLESEGLNTFIYTGSYRVPPVTFTGSIMRDIVLIDKVIGVGEIA
ISDHRSSQPTLEEILRIVADIRVGGMISGKAGIVNFHVGSGKRGIEYLFD
IIEKTEIPIQHLYPTHMSRSRKLFEQGLEFAKRGGTIDLTALQPEFTTID
AICEAYENGLLDNVTISSDGQGSLPKFDDNGNFVGLDVGSVSAVWYTIRK
VLEKGLPLAEVLKISTTNPARVFKLNKGKIAKGQDADFILVDEQSFEIVS
VISKGEFLMKDGVMKNLNFE
Ligand information
Ligand IDFWO
InChIInChI=1S/C10H18N2O5/c1-5(2)3-7(10(16)17)12-8(13)4-6(11)9(14)15/h5-7H,3-4,11H2,1-2H3,(H,12,13)(H,14,15)(H,16,17)/t6-,7-/m0/s1
InChIKeyIYJILWQAFPUBHP-BQBZGAKWSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(C)CC(C(=O)O)NC(=O)CC(C(=O)O)N
OpenEye OEToolkits 2.0.7CC(C)C[C@@H](C(=O)O)NC(=O)C[C@@H](C(=O)O)N
CACTVS 3.385CC(C)C[CH](NC(=O)C[CH](N)C(O)=O)C(O)=O
CACTVS 3.385CC(C)C[C@H](NC(=O)C[C@H](N)C(O)=O)C(O)=O
FormulaC10 H18 N2 O5
Name(2S)-2-[[(3S)-3-azanyl-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-4-methyl-pentanoic acid
ChEMBL
DrugBank
ZINCZINC000002522597
PDB chain7cf6 Chain D Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7cf6 Functional Characterization of Primordial Protein Repair Enzyme M38 Metallo-Peptidase From Fervidobacterium islandicum AW-1.
Resolution2.75 Å
Binding residue
(original residue number in PDB)		H63 Y130 R163 H195 H224 R227 D285 S289
Binding residue
(residue number reindexed from 1)		H55 Y122 R155 H187 H216 R219 D269 S273
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 18:38:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7cf6', asym_id = 'D', bs = 'BS01', title = 'Functional Characterization of Primordial Protei...-Peptidase From Fervidobacterium islandicum AW-1.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7cf6', asym_id='D', bs='BS01', title='Functional Characterization of Primordial Protei...-Peptidase From Fervidobacterium islandicum AW-1.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008798,0016787,0016810', uniprot = '', pdbid = '7cf6', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008798,0016787,0016810', uniprot='', pdbid='7cf6', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>